plot_counts {PvSTATEM} | R Documentation |
Plot counts in a 96-well plate
Description
This is a function used to plot counts in a 96-well plate using a color to represent the count ranges.
There is possibility to plot exact counts in each well.
If plot window is resized, it's best to re-run the function to adjust the scaling.
Sometimes when legend is plotted, whole layout may be shifted, then it's best to stretch the window, and everything will be adjusted automatically.
Usage
plot_counts(
plate,
analyte_name,
plot_counts = TRUE,
plot_legend = FALSE,
lower_threshold = 50,
higher_threshold = 70
)
Arguments
plate |
The plate object with the counts data |
analyte_name |
The name of the analyte |
plot_counts |
Logical indicating if the counts should be plotted |
plot_legend |
Logical indicating if the legend should be plotted |
lower_threshold |
The lower threshold for the counts, it separates green and yellow colors |
higher_threshold |
The higher threshold for the counts, it separates yellow and red colors |
Value
A ggplot object
Examples
plate_filepath <- system.file("extdata", "CovidOISExPONTENT_CO.csv",
package = "PvSTATEM", mustWork = TRUE
)
layout_filepath <- system.file("extdata", "CovidOISExPONTENT_CO_layout.xlsx",
package = "PvSTATEM", mustWork = TRUE
)
plate <- read_luminex_data(plate_filepath, layout_filepath)
plot_counts(
plate = plate, analyte_name = "OC43_NP_NA",
plot_counts = TRUE, plot_legend = FALSE
)
[Package PvSTATEM version 0.0.4 Index]