%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  REDCapCAST
%global packver   24.10.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          24.10.3
Release:          1%{?dist}%{?buildtag}
Summary:          REDCap Castellated Data Handling

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4.0
Requires:         R-core >= 3.4.0
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-REDCapR 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-CRAN-keyring 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-haven 
BuildRequires:    R-CRAN-zip 
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-CRAN-openxlsx2 
BuildRequires:    R-CRAN-readODS 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-REDCapR 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tidyselect 
Requires:         R-CRAN-keyring 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-readr 
Requires:         R-stats 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-haven 
Requires:         R-CRAN-zip 
Requires:         R-CRAN-assertthat 
Requires:         R-CRAN-openxlsx2 
Requires:         R-CRAN-readODS 

%description
Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See
<https://github.com/pegeler/REDCapRITS>. 'REDCap' database casting and
handling of castellated data when using repeated instruments and
longitudinal projects. Keeps a focused data export approach, by allowing
to only export required data from the database. 'REDCap' (Research
Electronic Data Capture) is a secure, web-based software platform designed
to support data capture for research studies, providing 1) an intuitive
interface for validated data capture; 2) audit trails for tracking data
manipulation and export procedures; 3) automated export procedures for
seamless data downloads to common statistical packages; and 4) procedures
for data integration and interoperability with external sources (Harris et
al (2009) <doi:10.1016/j.jbi.2008.08.010>; Harris et al (2019)
<doi:10.1016/j.jbi.2019.103208>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}