%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  smdi
%global packver   0.3.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.1
Release:          1%{?dist}%{?buildtag}
Summary:          Perform Structural Missing Data Investigations

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-broom 
BuildRequires:    R-CRAN-caret 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-fastDummies 
BuildRequires:    R-CRAN-forcats 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-gt 
BuildRequires:    R-CRAN-Hotelling 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-mice 
BuildRequires:    R-CRAN-naniar 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-pROC 
BuildRequires:    R-CRAN-randomForest 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-tableone 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-broom 
Requires:         R-CRAN-caret 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-fastDummies 
Requires:         R-CRAN-forcats 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-gt 
Requires:         R-CRAN-Hotelling 
Requires:         R-CRAN-lifecycle 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-mice 
Requires:         R-CRAN-naniar 
Requires:         R-parallel 
Requires:         R-CRAN-pROC 
Requires:         R-CRAN-randomForest 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-tableone 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 

%description
An easy to use implementation of routine structural missing data
diagnostics with functions to visualize the proportions of missing
observations, investigate missing data patterns and conduct various
empirical missing data diagnostic tests. Reference: Weberpals J, Raman SR,
Shaw PA, Lee H, Hammill BG, Toh S, Connolly JG, Dandreo KJ, Tian F, Liu W,
Li J, Hernández-Muñoz JJ, Glynn RJ, Desai RJ. smdi: an R package to
perform structural missing data investigations on partially observed
confounders in real-world evidence studies. JAMIA Open. 2024 Jan
31;7(1):ooae008. <doi:10.1093/jamiaopen/ooae008>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}