geomean {GeneScoreR}R Documentation

Calculate Geometric Means from Count Tables

Description

This function computes the geometric mean for each sample in the given count table.

Usage

geomean(count_table)

Arguments

count_table

A data frame of gene count data (genes as rows, samples as columns). All columns must be numeric.

Value

A data frame with the geometric means per sample and the sample IDs.

Examples

# Example data to be scored
count_table <- data.frame(
  sample1 = c(1, 10, 100),
  sample2 = c(2, 20, 200),
  sample3 = c(3, 30, 300)
)
rownames(count_table) <- c("gene1", "gene2", "gene3")

# Calculate Geometric Mean per sample in the count_table
geomean(count_table)

[Package GeneScoreR version 0.1.1 Index]