fitCycleOrders {MSCquartets} | R Documentation |
Compute fit of circular orders to distance with least squares
Description
Compute residual sum of squares (RSS) comparing empirical distance for a blob to an expected one for a cycle with each given order/designated hybrid. This is used in NANAUQ+ commands for resolving multifurcations in a tree of blobs to a cycle
Usage
fitCycleOrders(D, E, orders)
Arguments
D |
an empirical distance table |
E |
an expected distance table, to be reordered |
orders |
a vector indicating an order, or matrix whose rows give orders, to fit |
Value
vector of RSSs, one for each order
See Also
[Package MSCquartets version 3.0 Index]