quartetTallyCpp {MSCquartets} | R Documentation |
Build quartet table from distances
Description
This is a C++ function, called from quartetTable, to fill in the quartet counts. From a list of topological distance matrices (1 for each gene tree) it determines all gene quartets. It is not intended to be used as a stand-alone function, and hence not fully documented. The faster looping in C++ over R gives substantial time improvements
Usage
quartetTallyCpp(dList, M, nt, Q, random, progressbar = FALSE)
Arguments
dList |
a list of distance matrices |
M |
number of sets of 4 taxa |
nt |
number of gene trees/distance matrices |
Q |
matrix to fill out as table of quartet counts |
random |
if 0 compute for all sets of 4 taxa, otherwise for M random ones |
progressbar |
if TRUE, display progress bar |
See Also
quartetTable
, quartetTableParallel
[Package MSCquartets version 3.0 Index]