settings_matrix_heatmap {metasnf} | R Documentation |
Heatmap for visualizing a settings matrix
Description
Scales settings matrix values between 0 and 1 and plots as a heatmap. Rows can be reordered to match prior meta clustering results.
Usage
settings_matrix_heatmap(
settings_matrix,
order = NULL,
remove_fixed_columns = TRUE,
show_column_names = TRUE,
show_row_names = TRUE,
rect_gp = grid::gpar(col = "black"),
colour_breaks = c(0, 1),
colours = c("black", "darkseagreen"),
column_split_vector = NULL,
row_split_vector = NULL,
column_split = NULL,
row_split = NULL,
column_title = NULL,
...
)
Arguments
settings_matrix |
Matrix indicating parameters to iterate SNF through. |
order |
Numeric vector indicating row ordering of settings matrix. |
remove_fixed_columns |
Whether columns that have no variation should be removed. |
show_column_names |
Whether column names should be shown. |
show_row_names |
Whether row names should be shown. |
rect_gp |
Cell border function for |
colour_breaks |
Numeric vector of breaks for the legend. |
colours |
Vector of colours to use for the heatmap. Should match the length of colour_breaks. |
column_split_vector |
Vector of indices to split columns by. |
row_split_vector |
Vector of indices to split rows by. |
column_split |
Standard parameter of |
row_split |
Standard parameter of |
column_title |
Standard parameter of |
... |
Additional parameters passed to |
Value
Returns a heatmap (class "Heatmap" from package ComplexHeatmap) that displays the scaled values of the provided settings matrix.