searchBeid {BED} | R Documentation |
Search a BEID
Description
Search a BEID
Usage
searchBeid(x, maxHits = 75, clean_id_search = TRUE, clean_name_search = TRUE)
Arguments
x |
a character value to search |
maxHits |
maximum number of raw hits to return |
clean_id_search |
clean x to avoid error during ID search. Default: TRUE. Set it to false if you're sure of your lucene query. |
clean_name_search |
clean x to avoid error during ID search. Default: TRUE. Set it to false if you're sure of your lucene query. |
Value
NULL if there is not any match or a data.frame with the following columns:
-
value: the matching term
-
from: the type of the matched term (e.g. BESymbol, GeneID...)
-
be: the matching biological entity (BE)
-
beid: the BE identifier
-
source: the BEID reference database
-
preferred: TRUE if the BEID is considered as a preferred identifier
-
symbol: BEID canonical symbol
-
name: BEID name
-
entity: technical BE identifier
-
GeneID: Corresponding gene identifier
-
Gene_source: Gene ID database
-
preferred_gene: TRUE if the GeneID is considered as a preferred identifier
-
Gene_symbol: Gene symbol
-
Gene_name: Gene name
-
Gene_entity: technical gene identifier
-
organism: gene organism (scientific name)
-
score: score of the fuzzy search
-
included: is the search term fully included in the value
-
exact: is the value an exact match of the term