smart_plot {BioVizSeq}R Documentation

smart_plot

Description

Visualization of domain in SMART result file

Usage

smart_plot(
  fasta_file,
  the_order = NULL,
  domain_select = NULL,
  shape = "RoundRect",
  r = 0.3,
  legend_size = 15,
  domain_color = NULL
)

Arguments

fasta_file

The path of protein fasta file.

the_order

The path of order file. A List of Gene ID , One ID Per Line.

domain_select

The domain ID which you want to align with.

shape

RoundRect or Rect.

r

The radius of rounded corners.

legend_size

The size of legend.

domain_color

The color set of domain.

Value

p

Author(s)

Shiqi Zhao


[Package BioVizSeq version 0.1.0 Index]