boot.fun |
Nonparametric bootstrap approach for the dependent censoring model |
boot.funI |
Nonparametric bootstrap approach for the independent censoring model |
boot.nonparTrans |
Nonparametric bootstrap approach for a Semiparametric transformation model under dependent censpring |
Bvprob |
Compute bivariate survival probability |
chol2par |
Transform Cholesky decomposition to covariance matrix |
chol2par.elem |
Transform Cholesky decomposition to covariance matrix parameter element. |
CompC |
Compute phi function |
cr.lik |
Competing risk likelihood function. |
dat.sim.reg.comp.risks |
Data generation function for competing risks data |
dchol2par |
Derivative of transform Cholesky decomposition to covariance matrix. |
dchol2par.elem |
Derivative of transform Cholesky decomposition to covariance matrix element. |
Distance |
Distance between vectors |
DYJtrans |
Derivative of the Yeo-Johnson transformation function |
estimate.cf |
Estimate the control function |
estimate.cmprsk |
Estimate the competing risks model of Rutten, Willems et al. (20XX). |
fitDepCens |
Fit Dependent Censoring Models |
fitIndepCens |
Fit Independent Censoring Models |
IYJtrans |
Inverse Yeo-Johnson transformation function |
LikCopInd |
Loglikehood function under independent censoring |
LikF.cmprsk |
Second step log-likelihood function. |
likF.cmprsk.Cholesky |
Wrapper implementing likelihood function using Cholesky factorization. |
LikGamma1 |
First step log-likelihood function for Z continuous |
LikGamma2 |
First step log-likelihood function for Z binary. |
LikI.bis |
Second likelihood function needed to fit the independence model in the second step of the estimation procedure. |
LikI.cmprsk |
Second step log-likelihood function under independence assumption. |
LikI.cmprsk.Cholesky |
Wrapper implementing likelihood function assuming independence between competing risks and censoring using Cholesky factorization. |
likIFG.cmprsk.Cholesky |
Full likelihood (including estimation of control function). |
loglike.clayton.unconstrained |
Log-likelihood function for the Clayton copula. |
loglike.frank.unconstrained |
Log-likelihood function for the Frank copula. |
loglike.gaussian.unconstrained |
Log-likelihood function for the Gaussian copula. |
loglike.gumbel.unconstrained |
Log-likelihood function for the Gumbel copula. |
loglike.indep.unconstrained |
Log-likelihood function for the independence copula. |
log_transform |
Logarithmic transformation function. |
Longfun |
Long format |
LongNPT |
Change H to long format |
NonParTrans |
Fit a semiparametric transformation model for dependent censoring |
optimlikelihood |
Fit the dependent censoring models. |
ParamCop |
Estimation of a parametric dependent censoring model without covariates. |
power_transform |
Power transformation function. |
PseudoL |
Likelihood function under dependent censoring |
ScoreEqn |
Score equations of finite parameters |
SearchIndicate |
Search function |
SolveH |
Estimate a nonparametric transformation function |
SolveHt1 |
Estimating equation for Ht1 |
SolveL |
Cumulative hazard function of survival time under dependent censoring |
SolveLI |
Cumulative hazard function of survival time under independent censoring |
SolveScore |
Estimate finite parameters based on score equations |
summary.depFit |
Summary of 'depCensoringFit' object |
summary.indepFit |
Summary of 'indepCensoringFit' object |
TCsim |
Function to simulate (Y,Delta) from the copula based model for (T,C). |
uniformize.data |
Standardize data format |
variance.cmprsk |
Compute the variance of the estimates. |
YJtrans |
Yeo-Johnson transformation function |