databaseDiagnostics {PhenotypeR} | R Documentation |
Database diagnostics
Description
phenotypeR diagnostics on the cdm object.
Diagnostics include: * Summarise a cdm_reference object, creating a snapshot with the metadata of the cdm_reference object. * Summarise the observation period table getting some overall statistics in a summarised_result object.
Usage
databaseDiagnostics(cdm)
Arguments
cdm |
CDM reference |
Value
A summarised result
Examples
cdm_local <- omock::mockCdmReference() |>
omock::mockPerson(nPerson = 100) |>
omock::mockObservationPeriod() |>
omock::mockConditionOccurrence() |>
omock::mockDrugExposure() |>
omock::mockObservation() |>
omock::mockMeasurement() |>
omock::mockCohort(name = "my_cohort", numberCohorts = 2)
db <- DBI::dbConnect(duckdb::duckdb())
cdm <- CDMConnector::copyCdmTo(con = db,
cdm = cdm_local,
schema ="main",
overwrite = TRUE)
db_diag <- databaseDiagnostics(cdm)
CDMConnector::cdmDisconnect(cdm = cdm)
[Package PhenotypeR version 0.1.0 Index]