scregclust_format {scregclust}R Documentation

Package data before clustering

Description

Package data before clustering

Usage

scregclust_format(expression_matrix, mode = c("TF", "kinase"))

Arguments

expression_matrix

The p x n gene expression matrix with gene symbols as rownames.

mode

Determines which genes are considered to be regulators.

Value

A list with

genesymbols

The gene symbols extracted from the expression matrix

sample_assignment

A vector filled with 1's of the same length as there are columns in the gene expression matrix.

is_regulator

Whether a gene is considered to be a regulator or not, determined dependent on mode.

See Also

get_regulator_list()


[Package scregclust version 0.2.0 Index]