Characterise Tables of an OMOP Common Data Model Instance


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Documentation for package ‘OmopSketch’ version 0.2.0

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mockOmopSketch Creates a mock database to test OmopSketch package.
plotConceptSetCounts Plot the concept counts of a summariseConceptSetCounts output.
plotInObservation Create a ggplot2 plot from the output of summariseInObservation().
plotObservationPeriod Create a plot from the output of summariseObservationPeriod().
plotRecordCount Create a ggplot of the records' count trend.
summariseClinicalRecords Summarise an omop table from a cdm object. You will obtain information related to the number of records, number of subjects, whether the records are in observation, number of present domains and number of present concepts.
summariseConceptCounts Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.
summariseConceptIdCounts Summarise concept use in patient-level data
summariseConceptSetCounts Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.
summariseInObservation Summarise the number of people in observation during a specific interval of time.
summariseMissingData Summarise missing data in omop tables
summariseObservationPeriod Summarise the observation period table getting some overall statistics in a summarised_result object.
summariseOmopSnapshot Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object.
summariseRecordCount Summarise record counts of an omop_table using a specific time interval. Only records that fall within the observation period are considered.
tableClinicalRecords Create a visual table from a summariseClinicalRecord() output.
tableConceptIdCounts Create a visual table from a summariseConceptIdCounts() result.
tableMissingData Create a visual table from a summariseMissingData() result.
tableObservationPeriod Create a visual table from a summariseObservationPeriod() result.
tableOmopSnapshot Create a visual table from a summarise_omop_snapshot result.