summariseConceptIdCounts {OmopSketch}R Documentation

Summarise concept use in patient-level data

Description

Summarise concept use in patient-level data

Usage

summariseConceptIdCounts(
  cdm,
  omopTableName,
  countBy = "record",
  year = FALSE,
  sex = FALSE,
  ageGroup = NULL,
  sample = NULL,
  dateRange = NULL
)

Arguments

cdm

A cdm object

omopTableName

A character vector of the names of the tables to summarise in the cdm object.

countBy

Either "record" for record-level counts or "person" for person-level counts

year

TRUE or FALSE. If TRUE code use will be summarised by year.

sex

TRUE or FALSE. If TRUE code use will be summarised by sex.

ageGroup

A list of ageGroup vectors of length two. Code use will be thus summarised by age groups.

sample

An integer to sample the tables to only that number of records. If NULL no sample is done.

dateRange

A list containing the minimum and the maximum dates defining the time range within which the analysis is performed.

Value

A summarised_result object with results overall and, if specified, by strata.

Examples


library(OmopSketch)
library(CDMConnector)
library(duckdb)

requireEunomia()
con <- dbConnect(duckdb(), eunomiaDir())
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")

summariseConceptIdCounts(cdm, "condition_occurrence")



[Package OmopSketch version 0.2.0 Index]