%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname immunogenetr %global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: A Comprehensive Toolkit for Clinical HLA Informatics License: GPL (>= 3) URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.1.0 Requires: R-core >= 4.1.0 BuildArch: noarch BuildRequires: R-CRAN-tibble >= 3.1.3 BuildRequires: R-CRAN-magrittr >= 2.0.3 BuildRequires: R-CRAN-glue >= 1.8.0 BuildRequires: R-CRAN-stringr >= 1.5.0 BuildRequires: R-CRAN-xml2 >= 1.3.6 BuildRequires: R-CRAN-tidyr >= 1.3.0 BuildRequires: R-CRAN-tidyselect >= 1.2.0 BuildRequires: R-CRAN-rlang >= 1.1.2 BuildRequires: R-CRAN-dplyr >= 1.1.1 BuildRequires: R-CRAN-purrr >= 1.0.2 BuildRequires: R-CRAN-cli >= 1.0.0 Requires: R-CRAN-tibble >= 3.1.3 Requires: R-CRAN-magrittr >= 2.0.3 Requires: R-CRAN-glue >= 1.8.0 Requires: R-CRAN-stringr >= 1.5.0 Requires: R-CRAN-xml2 >= 1.3.6 Requires: R-CRAN-tidyr >= 1.3.0 Requires: R-CRAN-tidyselect >= 1.2.0 Requires: R-CRAN-rlang >= 1.1.2 Requires: R-CRAN-dplyr >= 1.1.1 Requires: R-CRAN-purrr >= 1.0.2 Requires: R-CRAN-cli >= 1.0.0 %description A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' principles and making use of genotype list string (GL string, Mack et al. (2023) ) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}