%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname FracFixR %global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: Compositional Statistical Framework for RNA Fractionation Analysis License: CC BY 4.0 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.0.0 Requires: R-core >= 4.0.0 BuildArch: noarch BuildRequires: R-CRAN-ggplot2 >= 3.3.5 BuildRequires: R-CRAN-future.apply >= 1.8.1 BuildRequires: R-CRAN-nnls >= 1.4 BuildRequires: R-CRAN-aod >= 1.3.1 BuildRequires: R-CRAN-tidyr >= 1.1.3 BuildRequires: R-CRAN-RColorBrewer >= 1.1.2 BuildRequires: R-CRAN-dplyr >= 1.0.7 BuildRequires: R-CRAN-matrixStats >= 0.60.0 BuildRequires: R-stats BuildRequires: R-utils BuildRequires: R-CRAN-future BuildRequires: R-grDevices Requires: R-CRAN-ggplot2 >= 3.3.5 Requires: R-CRAN-future.apply >= 1.8.1 Requires: R-CRAN-nnls >= 1.4 Requires: R-CRAN-aod >= 1.3.1 Requires: R-CRAN-tidyr >= 1.1.3 Requires: R-CRAN-RColorBrewer >= 1.1.2 Requires: R-CRAN-dplyr >= 1.0.7 Requires: R-CRAN-matrixStats >= 0.60.0 Requires: R-stats Requires: R-utils Requires: R-CRAN-future Requires: R-grDevices %description A compositional statistical framework for absolute proportion estimation between fractions in RNA sequencing data. 'FracFixR' addresses the fundamental challenge in fractionated RNA-seq experiments where library preparation and sequencing depth obscure the original proportions of RNA fractions. It reconstructs original fraction proportions using non-negative linear regression, estimates the "lost" unrecoverable fraction, corrects individual transcript frequencies, and performs differential proportion testing between conditions. Supports any RNA fractionation protocol including polysome profiling, sub-cellular localization, and RNA-protein complex isolation. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}