%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  SVEMnet
%global packver   2.5.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.5.4
Release:          1%{?dist}%{?buildtag}
Summary:          Self-Validated Ensemble Models with Lasso and Relaxed Elastic Net Regression

License:          GPL-2 | GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-glmnet >= 4.1.6
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-cluster 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-lhs 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-doRNG 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-gamlss 
BuildRequires:    R-CRAN-gamlss.dist 
Requires:         R-CRAN-glmnet >= 4.1.6
Requires:         R-stats 
Requires:         R-CRAN-cluster 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-lhs 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-doRNG 
Requires:         R-parallel 
Requires:         R-CRAN-gamlss 
Requires:         R-CRAN-gamlss.dist 

%description
Implements Self-Validated Ensemble Models (SVEM; Lemkus et al. (2021)
<doi:10.1016/j.chemolab.2021.104439>) using elastic net regression via
'glmnet' (Friedman et al. (2010) <doi:10.18637/jss.v033.i01>). SVEM
averages predictions from multiple models fitted to fractionally weighted
bootstraps of the data, tuned with anti-correlated validation weights.
Supports Gaussian and binomial responses. Also implements the randomized
permutation whole-model test for SVEM with Gaussian responses (Karl (2024)
<doi:10.1016/j.chemolab.2024.105122>). Some parts of the package code were
drafted with assistance from generative AI tools.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}