%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mccount
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Estimate Recurrent Event Burden with Competing Risks

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-cards 
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-cmprsk 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-cards 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-cmprsk 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-lifecycle 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 

%description
Calculates mean cumulative count (MCC) to estimate the expected cumulative
number of recurrent events per person over time in the presence of
competing risks and censoring. Implements both the Dong-Yasui equation
method and sum of cumulative incidence method described in Dong, et al.
(2015) <doi:10.1093/aje/kwu289>. Supports inverse probability weighting
for causal inference as outlined in Gaber, et al. (2023)
<doi:10.1093/aje/kwad031>. Provides S3 methods for printing, summarizing,
plotting, and extracting results. Handles grouped analyses and integrates
with 'ggplot2' <https://ggplot2.tidyverse.org/> for visualization.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}