%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  TwoDcDAPSA
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Calculate TwoDcDAPSA: PROs-Joint Contrast (PJC) Score and Quartiles

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6
Requires:         R-core >= 3.6
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-splines 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-dplyr 
Requires:         R-splines 
Requires:         R-CRAN-rlang 

%description
Provides a calculator for the two-dimensional clinical Disease Activity
index for Psoriatic Arthritis (TwoDcDAPSA), a principal component-derived
measure that complements the conventional clinical DAPSA score. The
TwoDcDAPSA captures residual variation in patient-reported outcomes (pain
and patient global assessment) and joint counts (swollen and tender) after
adjusting for standardized cDAPSA using natural spline coefficients
derived from published models. Residuals are standardized and combined
with fixed principal component loadings to yield a continuous PROs-Joint
Contrast (PJC) score and quartile groupings. The package applies
pre-specified coefficients and loadings to new datasets but does not
estimate spline models or principal components itself.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}