%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname DTEAssurance %global packver 1.0.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.0.0 Release: 1%{?dist}%{?buildtag} Summary: Assurance Methods for Clinical Trials with a Delayed Treatment Effect License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.0 Requires: R-core >= 4.0 BuildArch: noarch BuildRequires: R-CRAN-SHELF BuildRequires: R-CRAN-shiny BuildRequires: R-stats BuildRequires: R-CRAN-survival BuildRequires: R-CRAN-nleqslv BuildRequires: R-CRAN-nph BuildRequires: R-CRAN-nphRCT BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-rjags BuildRequires: R-CRAN-rpact BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-future.apply Requires: R-CRAN-SHELF Requires: R-CRAN-shiny Requires: R-stats Requires: R-CRAN-survival Requires: R-CRAN-nleqslv Requires: R-CRAN-nph Requires: R-CRAN-nphRCT Requires: R-CRAN-dplyr Requires: R-CRAN-rjags Requires: R-CRAN-rpact Requires: R-CRAN-magrittr Requires: R-CRAN-rlang Requires: R-CRAN-future.apply %description Provides functions for planning clinical trials subject to a delayed treatment effect using assurance-based methods. Includes two 'shiny' applications for interactive exploration, simulation, and visualisation of trial designs and outcomes. The methodology is described in: Salsbury JA, Oakley JE, Julious SA, Hampson LV (2024) "Assurance methods for designing a clinical trial with a delayed treatment effect" , Salsbury JA, Oakley JE, Julious SA, Hampson LV (2024) "Adaptive clinical trial design with delayed treatment effects using elicited prior distributions" . %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}