%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  epidict
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Epidemiology Data Dictionaries and Random Data Generators

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-clipr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-utils 
Requires:         R-CRAN-clipr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-rlang 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-utils 

%description
The 'R4EPIs' project <https://r4epi.github.io/sitrep/> seeks to provide a
set of standardized tools for analysis of outbreak and survey data in
humanitarian aid settings. This package currently provides standardized
data dictionaries from Medecins Sans Frontieres Operational Centre
Amsterdam for outbreak scenarios (Acute Jaundice Syndrome, Cholera,
Diphtheria, Measles, Meningitis) and surveys (Retrospective mortality and
access to care, Malnutrition, Vaccination coverage and Event Based
Surveillance) - as described in the following
<https://scienceportal.msf.org/assets/standardised-mortality-surveys?utm_source=chatgpt.com>.
In addition, a data generator from these dictionaries is provided. It is
also possible to read in any Open Data Kit format data dictionary.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}