%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  ProfileGLMM
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Bayesian Profile Regression using Generalised Linear Mixed Models

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-LaplacesDemon 
BuildRequires:    R-CRAN-MCMCpack 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-Spectrum 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-CRAN-RcppDist 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-LaplacesDemon 
Requires:         R-CRAN-MCMCpack 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-Spectrum 
Requires:         R-CRAN-mvtnorm 

%description
Implements a Bayesian profile regression using a generalized linear mixed
model as output model. The package allows for binary (probit mixed model)
and continuous (linear mixed model) outcomes and both continuous and
categorical clustering variables. The package utilizes 'RcppArmadillo' and
'RcppDist' for high-performance statistical computing in C++. For more
details see Amestoy & al. (2025) <doi:10.48550/arXiv.2510.08304>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}