%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PlateVision
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Automated qPCR Analysis and Visual Quality Control

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-plotly 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-plotly 

%description
Directly pipes raw quantitative PCR (qPCR) machine outputs into downstream
analyses using the comparative Ct (Delta-Delta Ct) method described by
Livak and Schmittgen (2001) <doi:10.1006/meth.2001.1262>. Streamlines the
workflow from 'Excel' export to publication-ready plots. Integrates unique
visual quality control by reconstructing 96-well plate heatmaps, allowing
users to instantly detect pipetting errors, edge effects, and outliers.
Key features include automated error propagation, laboratory master mix
calculations, and generation of bar charts and volcano plots.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}