%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  BayesVolcano
%global packver   1.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Creating Volcano Plots from Bayesian Model Posteriors

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.5
Requires:         R-core >= 4.5
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-HDInterval 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-HDInterval 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-tidyr 

%description
Bayesian models are used to estimate effect sizes (e.g., gene expression
changes, protein abundance differences, drug response effects) while
accounting for uncertainty, small sample sizes, and complex experimental
designs. However, Bayesian posteriors of models with many parameters are
often difficult to interpret at a glance. One way to quickly identify
important biological changes based on frequentist analysis are volcano
plots (using fold-changes and p-values). Bayesian volcano plots bring
together the explicit treatment of uncertainty in Bayesian models and the
familiar visualization of volcano plots.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}