Warning: Permanently added '34.201.218.220' (ED25519) to the list of known hosts. Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-g4otp2go/R-CRAN-ClustAssess/R-CRAN-ClustAssess.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-g4otp2go/R-CRAN-ClustAssess --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1756249746.473895 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.3 starting (python version = 3.13.5, NVR = mock-6.3-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-g4otp2go/R-CRAN-ClustAssess/R-CRAN-ClustAssess.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-g4otp2go/R-CRAN-ClustAssess --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1756249746.473895 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-g4otp2go/R-CRAN-ClustAssess/R-CRAN-ClustAssess.spec) Config(fedora-43-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.3 INFO: Mock Version: 6.3 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-1756249746.473895/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 python3-dnf-4.23.0-1.fc42.noarch python3-dnf-plugins-core-4.10.1-1.fc42.noarch dnf5-5.2.16.0-1.fc42.x86_64 dnf5-plugins-5.2.16.0-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 96.2 KiB/s | 1.5 KiB | 00m00s fedora 100% | 49.5 KiB/s | 29.3 KiB | 00m01s updates 100% | 100.7 KiB/s | 31.1 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.7-5.fc43 fedora 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 43-0.22 fedora 20.4 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42-4.fc43 fedora 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.13-4.fc43 fedora 388.8 KiB info x86_64 7.2-6.fc43 fedora 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-11.fc43 fedora 182.9 KiB rpm-build x86_64 5.99.91-5.fc43 fedora 285.5 KiB sed x86_64 4.9-5.fc43 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-67.fc43 fedora 386.3 KiB util-linux x86_64 2.41.1-16.fc43 fedora 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-2.fc43 fedora 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-2.fc43 fedora 2.4 MiB alternatives x86_64 1.33-2.fc43 fedora 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.1-2.fc43 fedora 378.8 KiB binutils x86_64 2.45-1.fc43 fedora 26.5 MiB build-reproducibility-srpm-macros noarch 0.6.0-2.fc43 fedora 735.0 B bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-1.0.fc43 fedora 2.7 MiB coreutils-common x86_64 9.7-5.fc43 fedora 11.3 MiB crypto-policies noarch 20250714-4.gitcd6043a.fc43 fedora 146.9 KiB curl x86_64 8.15.0-2.fc43 fedora 473.6 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc43 fedora 2.3 MiB debugedit x86_64 5.2-2.fc43 fedora 197.8 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc43 fedora 148.1 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils x86_64 0.193-3.fc43 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0.193-3.fc43 fedora 83.9 KiB elfutils-default-yama-scope noarch 0.193-3.fc43 fedora 1.8 KiB elfutils-libelf x86_64 0.193-3.fc43 fedora 1.2 MiB elfutils-libs x86_64 0.193-3.fc43 fedora 683.4 KiB fedora-gpg-keys noarch 43-0.4 fedora 131.2 KiB fedora-release noarch 43-0.22 fedora 0.0 B fedora-release-identity-basic noarch 43-0.22 fedora 658.0 B fedora-repos noarch 43-0.4 fedora 4.9 KiB file x86_64 5.46-7.fc43 fedora 100.2 KiB file-libs x86_64 5.46-7.fc43 fedora 11.9 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 1-1.fc43 fedora 2.0 KiB gdb-minimal x86_64 16.3-5.fc43 fedora 13.3 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42-4.fc43 fedora 6.7 MiB glibc-common x86_64 2.42-4.fc43 fedora 1.0 MiB glibc-gconv-extra x86_64 2.42-4.fc43 fedora 7.2 MiB gmp x86_64 1:6.3.0-4.fc43 fedora 811.2 KiB gnat-srpm-macros noarch 6-8.fc43 fedora 1.0 KiB gnupg2 x86_64 2.4.8-4.fc43 fedora 6.5 MiB gnupg2-dirmngr x86_64 2.4.8-4.fc43 fedora 618.4 KiB gnupg2-gpg-agent x86_64 2.4.8-4.fc43 fedora 671.4 KiB gnupg2-gpgconf x86_64 2.4.8-4.fc43 fedora 250.0 KiB gnupg2-keyboxd x86_64 2.4.8-4.fc43 fedora 201.4 KiB gnupg2-verify x86_64 2.4.8-4.fc43 fedora 348.5 KiB gnutls x86_64 3.8.10-3.fc43 fedora 3.8 MiB go-srpm-macros noarch 3.7.0-4.fc43 fedora 61.6 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-6.fc43 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.21.3-7.fc43 fedora 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.1-3.fc43 fedora 951.1 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.1-16.fc43 fedora 262.4 KiB libbrotli x86_64 1.1.0-9.fc43 fedora 833.3 KiB libcap x86_64 2.76-3.fc43 fedora 209.1 KiB libcap-ng x86_64 0.8.5-7.fc43 fedora 68.9 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.15.0-2.fc43 fedora 903.2 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.1-16.fc43 fedora 380.4 KiB libffi x86_64 3.5.1-2.fc43 fedora 83.6 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-1.fc43.1 fedora 266.6 KiB libgcrypt x86_64 1.11.1-2.fc43 fedora 1.6 MiB libgomp x86_64 15.2.1-1.fc43.1 fedora 541.1 KiB libgpg-error x86_64 1.55-2.fc43 fedora 915.3 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.1-16.fc43 fedora 33.9 KiB libmount x86_64 2.41.1-16.fc43 fedora 372.7 KiB libnghttp2 x86_64 1.66.0-2.fc43 fedora 162.2 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-4.fc43 fedora 193.1 KiB libsemanage x86_64 3.9-3.fc43 fedora 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.1-16.fc43 fedora 180.5 KiB libssh x86_64 0.11.2-2.fc43 fedora 566.7 KiB libssh-config noarch 0.11.2-2.fc43 fedora 277.0 B libstdc++ x86_64 15.2.1-1.fc43.1 fedora 2.8 MiB libtasn1 x86_64 4.20.0-2.fc43 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-7.fc43 fedora 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.29-3.fc43 fedora 171.3 KiB libuuid x86_64 2.41.1-16.fc43 fedora 37.4 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.4.38-8.fc43 fedora 284.5 KiB libxml2 x86_64 2.12.10-4.fc43 fedora 1.7 MiB libzstd x86_64 1.5.7-2.fc43 fedora 799.9 KiB lua-libs x86_64 5.4.8-2.fc43 fedora 280.8 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.10-3.fc43 fedora 655.8 KiB openssl-libs x86_64 1:3.5.1-2.fc43 fedora 8.9 MiB p11-kit x86_64 0.25.5-9.fc43 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-9.fc43 fedora 395.5 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs x86_64 1.7.1-3.fc43 fedora 126.8 KiB pcre2 x86_64 10.45-1.fc43.1 fedora 697.7 KiB pcre2-syntax noarch 10.45-1.fc43.1 fedora 273.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-2.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.3-2.fc43 fedora 1.9 KiB python-srpm-macros noarch 3.14-5.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.17-2.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.9.1-2.fc43 fedora 464.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 5.99.91-5.fc43 fedora 3.0 MiB rpm-build-libs x86_64 5.99.91-5.fc43 fedora 268.4 KiB rpm-libs x86_64 5.99.91-5.fc43 fedora 933.7 KiB rpm-sequoia x86_64 1.9.0-2.fc43 fedora 2.5 MiB rpm-sign-libs x86_64 5.99.91-5.fc43 fedora 39.7 KiB rust-srpm-macros noarch 26.4-1.fc43 fedora 4.8 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs x86_64 257.7-1.fc43 fedora 2.2 MiB systemd-standalone-sysusers x86_64 257.7-1.fc43 fedora 277.3 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.1-16.fc43 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc43 fedora 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.2.5-1.fc43 fedora 137.6 KiB zstd x86_64 1.5.7-2.fc43 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 169 packages Total size of inbound packages is 59 MiB. Need to download 0 B. After this operation, 198 MiB extra will be used (install 198 MiB, remove 0 B). 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B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [169/169] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/171] Verify package files 100% | 871.0 B/s | 169.0 B | 00m00s [ 2/171] Prepare transaction 100% | 4.6 KiB/s | 169.0 B | 00m00s [ 3/171] Installing libgcc-0:15.2.1-1. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/171] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/171] Installing publicsuffix-list- 100% | 0.0 B/s | 69.8 KiB | 00m00s [ 6/171] Installing fedora-release-ide 100% | 0.0 B/s | 916.0 B | 00m00s [ 7/171] Installing fedora-gpg-keys-0: 100% | 58.3 MiB/s | 179.0 KiB | 00m00s [ 8/171] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/171] Installing fedora-release-com 100% | 24.2 MiB/s | 24.7 KiB | 00m00s [ 10/171] Installing fedora-release-0:4 100% | 10.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/171] Installing setup-0:2.15.0-26. 100% | 54.9 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/171] Installing filesystem-0:3.18- 100% | 2.9 MiB/s | 212.8 KiB | 00m00s [ 13/171] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 14/171] Installing pcre2-syntax-0:10. 100% | 269.9 MiB/s | 276.4 KiB | 00m00s [ 15/171] Installing ncurses-base-0:6.5 100% | 115.1 MiB/s | 353.5 KiB | 00m00s [ 16/171] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 17/171] Installing ncurses-libs-0:6.5 100% | 232.6 MiB/s | 952.8 KiB | 00m00s [ 18/171] Installing glibc-0:2.42-4.fc4 100% | 203.1 MiB/s | 6.7 MiB | 00m00s [ 19/171] Installing bash-0:5.3.0-2.fc4 100% | 281.0 MiB/s | 8.4 MiB | 00m00s [ 20/171] Installing glibc-common-0:2.4 100% | 63.8 MiB/s | 1.0 MiB | 00m00s [ 21/171] Installing glibc-gconv-extra- 100% | 270.7 MiB/s | 7.3 MiB | 00m00s [ 22/171] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 23/171] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.7 KiB | 00m00s [ 24/171] Installing libgpg-error-0:1.5 100% | 60.0 MiB/s | 921.1 KiB | 00m00s [ 25/171] Installing libstdc++-0:15.2.1 100% | 406.3 MiB/s | 2.8 MiB | 00m00s [ 26/171] Installing xz-libs-1:5.8.1-2. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 27/171] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 28/171] Installing libgcrypt-0:1.11.1 100% | 393.8 MiB/s | 1.6 MiB | 00m00s [ 29/171] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB | 00m00s [ 30/171] Installing gmp-1:6.3.0-4.fc43 100% | 397.2 MiB/s | 813.5 KiB | 00m00s [ 31/171] Installing libuuid-0:2.41.1-1 100% | 0.0 B/s | 38.3 KiB | 00m00s [ 32/171] Installing popt-0:1.19-9.fc43 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 33/171] Installing npth-0:1.8-3.fc43. 100% | 0.0 B/s | 50.7 KiB | 00m00s [ 34/171] Installing libblkid-0:2.41.1- 100% | 257.4 MiB/s | 263.5 KiB | 00m00s [ 35/171] Installing libxcrypt-0:4.4.38 100% | 280.4 MiB/s | 287.2 KiB | 00m00s [ 36/171] Installing libzstd-0:1.5.7-2. 100% | 391.2 MiB/s | 801.1 KiB | 00m00s [ 37/171] Installing elfutils-libelf-0: 100% | 388.8 MiB/s | 1.2 MiB | 00m00s [ 38/171] Installing sqlite-libs-0:3.50 100% | 379.1 MiB/s | 1.5 MiB | 00m00s [ 39/171] Installing gnupg2-gpgconf-0:2 100% | 12.3 MiB/s | 252.0 KiB | 00m00s [ 40/171] Installing crypto-policies-0: 100% | 42.0 MiB/s | 172.0 KiB | 00m00s [ 41/171] Installing libattr-0:2.5.2-6. 100% | 0.0 B/s | 25.4 KiB | 00m00s [ 42/171] Installing libacl-0:2.3.2-4.f 100% | 0.0 B/s | 36.8 KiB | 00m00s [ 43/171] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 44/171] Installing libunistring-0:1.1 100% | 345.3 MiB/s | 1.7 MiB | 00m00s [ 45/171] Installing libidn2-0:2.3.8-2. 100% | 272.8 MiB/s | 558.7 KiB | 00m00s [ 46/171] Installing dwz-0:0.16-2.fc43. 100% | 21.7 MiB/s | 288.5 KiB | 00m00s [ 47/171] Installing gnupg2-verify-0:2. 100% | 26.3 MiB/s | 349.9 KiB | 00m00s [ 48/171] Installing mpfr-0:4.2.2-2.fc4 100% | 271.6 MiB/s | 834.4 KiB | 00m00s [ 49/171] Installing gawk-0:5.3.2-2.fc4 100% | 106.8 MiB/s | 1.8 MiB | 00m00s [ 50/171] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.1 KiB | 00m00s [ 51/171] Installing unzip-0:6.0-67.fc4 100% | 29.3 MiB/s | 389.8 KiB | 00m00s [ 52/171] Installing file-libs-0:5.46-7 100% | 697.5 MiB/s | 11.9 MiB | 00m00s [ 53/171] Installing file-0:5.46-7.fc43 100% | 8.3 MiB/s | 101.7 KiB | 00m00s [ 54/171] Installing pcre2-0:10.45-1.fc 100% | 341.4 MiB/s | 699.1 KiB | 00m00s [ 55/171] Installing grep-0:3.12-2.fc43 100% | 62.7 MiB/s | 1.0 MiB | 00m00s [ 56/171] Installing xz-1:5.8.1-2.fc43. 100% | 83.2 MiB/s | 1.3 MiB | 00m00s [ 57/171] Installing libeconf-0:0.7.9-2 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 58/171] Installing libcap-ng-0:0.8.5- 100% | 69.2 MiB/s | 70.8 KiB | 00m00s [ 59/171] Installing audit-libs-0:4.1.1 100% | 186.3 MiB/s | 381.5 KiB | 00m00s [ 60/171] Installing pam-libs-0:1.7.1-3 100% | 126.0 MiB/s | 129.0 KiB | 00m00s [ 61/171] Installing libcap-0:2.76-3.fc 100% | 16.1 MiB/s | 214.3 KiB | 00m00s [ 62/171] Installing systemd-libs-0:257 100% | 372.0 MiB/s | 2.2 MiB | 00m00s [ 63/171] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 64/171] Installing libsepol-0:3.9-2.f 100% | 401.8 MiB/s | 822.9 KiB | 00m00s [ 65/171] Installing libselinux-0:3.9-4 100% | 189.8 MiB/s | 194.4 KiB | 00m00s [ 66/171] Installing sed-0:4.9-5.fc43.x 100% | 56.3 MiB/s | 865.5 KiB | 00m00s [ 67/171] Installing findutils-1:4.10.0 100% | 109.3 MiB/s | 1.9 MiB | 00m00s [ 68/171] Installing libmount-0:2.41.1- 100% | 364.9 MiB/s | 373.7 KiB | 00m00s [ 69/171] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [ 70/171] Installing lua-libs-0:5.4.8-2 100% | 275.3 MiB/s | 281.9 KiB | 00m00s [ 71/171] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 72/171] Installing libffi-0:3.5.1-2.f 100% | 83.0 MiB/s | 85.0 KiB | 00m00s [ 73/171] Installing p11-kit-0:0.25.5-9 100% | 115.0 MiB/s | 2.2 MiB | 00m00s [ 74/171] Installing alternatives-0:1.3 100% | 5.2 MiB/s | 63.8 KiB | 00m00s [ 75/171] Installing p11-kit-trust-0:0. 100% | 18.5 MiB/s | 397.1 KiB | 00m00s [ 76/171] Installing zstd-0:1.5.7-2.fc4 100% | 106.9 MiB/s | 1.7 MiB | 00m00s [ 77/171] Installing util-linux-core-0: 100% | 82.2 MiB/s | 1.5 MiB | 00m00s [ 78/171] Installing tar-2:1.35-6.fc43. 100% | 147.9 MiB/s | 3.0 MiB | 00m00s [ 79/171] Installing libsemanage-0:3.9- 100% | 303.0 MiB/s | 310.3 KiB | 00m00s [ 80/171] Installing systemd-standalone 100% | 20.9 MiB/s | 277.8 KiB | 00m00s [ 81/171] Installing libusb1-0:1.0.29-3 100% | 168.9 MiB/s | 172.9 KiB | 00m00s [ 82/171] Installing zip-0:3.0-44.fc43. 100% | 48.7 MiB/s | 698.4 KiB | 00m00s [ 83/171] Installing gnupg2-keyboxd-0:2 100% | 28.3 MiB/s | 202.7 KiB | 00m00s [ 84/171] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 85/171] Installing liblastlog2-0:2.41 100% | 7.0 MiB/s | 36.0 KiB | 00m00s [ 86/171] Installing libfdisk-0:2.41.1- 100% | 186.3 MiB/s | 381.5 KiB | 00m00s [ 87/171] Installing nettle-0:3.10.1-2. 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [ 88/171] Installing gnutls-0:3.8.10-3. 100% | 383.9 MiB/s | 3.8 MiB | 00m00s [ 89/171] Installing libxml2-0:2.12.10- 100% | 100.3 MiB/s | 1.7 MiB | 00m00s [ 90/171] Installing bzip2-0:1.0.8-21.f 100% | 8.1 MiB/s | 99.8 KiB | 00m00s [ 91/171] Installing add-determinism-0: 100% | 143.7 MiB/s | 2.4 MiB | 00m00s [ 92/171] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 93/171] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [ 94/171] Installing ed-0:1.22.2-1.fc43 100% | 12.2 MiB/s | 150.4 KiB | 00m00s [ 95/171] Installing patch-0:2.8-2.fc43 100% | 18.3 MiB/s | 224.3 KiB | 00m00s [ 96/171] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [ 97/171] Installing elfutils-libs-0:0. 100% | 223.1 MiB/s | 685.2 KiB | 00m00s [ 98/171] Installing cpio-0:2.15-6.fc43 100% | 68.7 MiB/s | 1.1 MiB | 00m00s [ 99/171] Installing diffutils-0:3.12-3 100% | 91.8 MiB/s | 1.6 MiB | 00m00s [100/171] Installing libgomp-0:15.2.1-1 100% | 264.8 MiB/s | 542.4 KiB | 00m00s [101/171] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 71.2 KiB | 00m00s [102/171] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [103/171] Installing cyrus-sasl-lib-0:2 100% | 127.6 MiB/s | 2.3 MiB | 00m00s [104/171] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [105/171] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [106/171] Installing pkgconf-0:2.3.0-3. 100% | 6.8 MiB/s | 91.0 KiB | 00m00s [107/171] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [108/171] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [109/171] Installing libbrotli-0:1.1.0- 100% | 272.0 MiB/s | 835.6 KiB | 00m00s [110/171] Installing libnghttp2-0:1.66. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [111/171] Installing keyutils-libs-0:1. 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [112/171] Installing libcom_err-0:1.47. 100% | 62.7 MiB/s | 64.2 KiB | 00m00s [113/171] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [114/171] Installing coreutils-common-0 100% | 418.2 MiB/s | 11.3 MiB | 00m00s [115/171] Installing openssl-libs-1:3.5 100% | 423.9 MiB/s | 8.9 MiB | 00m00s [116/171] Installing coreutils-0:9.7-5. 100% | 160.2 MiB/s | 5.4 MiB | 00m00s [117/171] Installing ca-certificates-0: 100% | 2.2 MiB/s | 2.5 MiB | 00m01s [118/171] Installing libarchive-0:3.8.1 100% | 232.7 MiB/s | 953.1 KiB | 00m00s [119/171] Installing krb5-libs-0:1.21.3 100% | 120.6 MiB/s | 2.3 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [120/171] Installing tpm2-tss-0:4.1.3-8 100% | 262.0 MiB/s | 1.6 MiB | 00m00s [121/171] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [122/171] Installing gnupg2-gpg-agent-0 100% | 30.0 MiB/s | 675.4 KiB | 00m00s [123/171] Installing libssh-0:0.11.2-2. 100% | 277.7 MiB/s | 568.7 KiB | 00m00s [124/171] Installing gzip-0:1.13-4.fc43 100% | 27.5 MiB/s | 394.4 KiB | 00m00s [125/171] Installing rpm-sequoia-0:1.9. 100% | 354.1 MiB/s | 2.5 MiB | 00m00s [126/171] Installing rpm-libs-0:5.99.91 100% | 304.4 MiB/s | 935.3 KiB | 00m00s [127/171] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 29.5 KiB | 00m00s [128/171] Installing libevent-0:2.1.12- 100% | 288.7 MiB/s | 886.8 KiB | 00m00s [129/171] Installing openldap-0:2.6.10- 100% | 214.7 MiB/s | 659.6 KiB | 00m00s [130/171] Installing libcurl-0:8.15.0-2 100% | 294.4 MiB/s | 904.3 KiB | 00m00s [131/171] Installing elfutils-debuginfo 100% | 7.0 MiB/s | 86.2 KiB | 00m00s [132/171] Installing elfutils-0:0.193-3 100% | 153.6 MiB/s | 2.9 MiB | 00m00s [133/171] Installing binutils-0:2.45-1. 100% | 340.3 MiB/s | 26.5 MiB | 00m00s [134/171] Installing gdb-minimal-0:16.3 100% | 301.3 MiB/s | 13.3 MiB | 00m00s [135/171] Installing debugedit-0:5.2-2. 100% | 16.3 MiB/s | 200.5 KiB | 00m00s [136/171] Installing curl-0:8.15.0-2.fc 100% | 22.2 MiB/s | 476.3 KiB | 00m00s [137/171] Installing rpm-0:5.99.91-5.fc 100% | 80.4 MiB/s | 2.5 MiB | 00m00s [138/171] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [139/171] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [140/171] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [141/171] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [142/171] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [143/171] Installing gnupg2-dirmngr-0:2 100% | 30.3 MiB/s | 621.1 KiB | 00m00s [144/171] Installing gnupg2-0:2.4.8-4.f 100% | 234.0 MiB/s | 6.6 MiB | 00m00s [145/171] Installing rpm-sign-libs-0:5. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [146/171] Installing rpm-build-libs-0:5 100% | 262.9 MiB/s | 269.2 KiB | 00m00s [147/171] Installing gpgverify-0:2.2-3. 100% | 0.0 B/s | 9.4 KiB | 00m00s [148/171] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [149/171] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [150/171] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [151/171] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [152/171] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [153/171] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [154/171] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [155/171] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [156/171] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [157/171] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [158/171] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.6 KiB | 00m00s [159/171] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [160/171] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [161/171] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [162/171] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [163/171] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.7 KiB | 00m00s [164/171] Installing python-srpm-macros 100% | 0.0 B/s | 52.8 KiB | 00m00s [165/171] Installing redhat-rpm-config- 100% | 92.3 MiB/s | 189.1 KiB | 00m00s [166/171] Installing rpm-build-0:5.99.9 100% | 20.5 MiB/s | 294.4 KiB | 00m00s [167/171] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [168/171] Installing which-0:2.23-3.fc4 100% | 6.4 MiB/s | 85.7 KiB | 00m00s [169/171] Installing util-linux-0:2.41. 100% | 105.1 MiB/s | 3.6 MiB | 00m00s [170/171] Installing shadow-utils-2:4.1 100% | 147.0 MiB/s | 4.0 MiB | 00m00s [171/171] Installing info-0:7.2-6.fc43. 100% | 212.3 KiB/s | 354.3 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-2.fc43.x86_64 alternatives-1.33-2.fc43.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.1-2.fc43.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45-1.fc43.x86_64 build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-1.0.fc43.noarch coreutils-9.7-5.fc43.x86_64 coreutils-common-9.7-5.fc43.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20250714-4.gitcd6043a.fc43.noarch curl-8.15.0-2.fc43.x86_64 cyrus-sasl-lib-2.1.28-33.fc43.x86_64 debugedit-5.2-2.fc43.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc43.x86_64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.193-3.fc43.x86_64 elfutils-debuginfod-client-0.193-3.fc43.x86_64 elfutils-default-yama-scope-0.193-3.fc43.noarch elfutils-libelf-0.193-3.fc43.x86_64 elfutils-libs-0.193-3.fc43.x86_64 fedora-gpg-keys-43-0.4.noarch fedora-release-43-0.22.noarch fedora-release-common-43-0.22.noarch fedora-release-identity-basic-43-0.22.noarch fedora-repos-43-0.4.noarch file-5.46-7.fc43.x86_64 file-libs-5.46-7.fc43.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-1-1.fc43.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-16.3-5.fc43.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42-4.fc43.x86_64 glibc-common-2.42-4.fc43.x86_64 glibc-gconv-extra-2.42-4.fc43.x86_64 glibc-minimal-langpack-2.42-4.fc43.x86_64 gmp-6.3.0-4.fc43.x86_64 gnat-srpm-macros-6-8.fc43.noarch gnupg2-2.4.8-4.fc43.x86_64 gnupg2-dirmngr-2.4.8-4.fc43.x86_64 gnupg2-gpg-agent-2.4.8-4.fc43.x86_64 gnupg2-gpgconf-2.4.8-4.fc43.x86_64 gnupg2-keyboxd-2.4.8-4.fc43.x86_64 gnupg2-verify-2.4.8-4.fc43.x86_64 gnutls-3.8.10-3.fc43.x86_64 go-srpm-macros-3.7.0-4.fc43.noarch gpg-pubkey-31645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.13-4.fc43.x86_64 ima-evm-utils-libs-1.6.2-6.fc43.x86_64 info-7.2-6.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.21.3-7.fc43.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.1-3.fc43.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.1-16.fc43.x86_64 libbrotli-1.1.0-9.fc43.x86_64 libcap-2.76-3.fc43.x86_64 libcap-ng-0.8.5-7.fc43.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.15.0-2.fc43.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.1-16.fc43.x86_64 libffi-3.5.1-2.fc43.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-1.fc43.1.x86_64 libgcrypt-1.11.1-2.fc43.x86_64 libgomp-15.2.1-1.fc43.1.x86_64 libgpg-error-1.55-2.fc43.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.1-16.fc43.x86_64 libmount-2.41.1-16.fc43.x86_64 libnghttp2-1.66.0-2.fc43.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-4.fc43.x86_64 libsemanage-3.9-3.fc43.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.1-16.fc43.x86_64 libssh-0.11.2-2.fc43.x86_64 libssh-config-0.11.2-2.fc43.noarch libstdc++-15.2.1-1.fc43.1.x86_64 libtasn1-4.20.0-2.fc43.x86_64 libtool-ltdl-2.5.4-7.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-3.fc43.x86_64 libuuid-2.41.1-16.fc43.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.4.38-8.fc43.x86_64 libxml2-2.12.10-4.fc43.x86_64 libzstd-1.5.7-2.fc43.x86_64 lua-libs-5.4.8-2.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-3.fc43.x86_64 openssl-libs-3.5.1-2.fc43.x86_64 p11-kit-0.25.5-9.fc43.x86_64 p11-kit-trust-0.25.5-9.fc43.x86_64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.45-1.fc43.1.x86_64 pcre2-syntax-10.45-1.fc43.1.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.3-2.fc43.noarch python-srpm-macros-3.14-5.fc43.noarch qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.9.1-2.fc43.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-11.fc43.noarch rpm-5.99.91-5.fc43.x86_64 rpm-build-5.99.91-5.fc43.x86_64 rpm-build-libs-5.99.91-5.fc43.x86_64 rpm-libs-5.99.91-5.fc43.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 rpm-sign-libs-5.99.91-5.fc43.x86_64 rust-srpm-macros-26.4-1.fc43.noarch sed-4.9-5.fc43.x86_64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.2-2.fc43.x86_64 systemd-libs-257.7-1.fc43.x86_64 systemd-standalone-sysusers-257.7-1.fc43.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-67.fc43.x86_64 util-linux-2.41.1-16.fc43.x86_64 util-linux-core-2.41.1-16.fc43.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-2.fc43.x86_64 xz-libs-5.8.1-2.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.2.5-1.fc43.x86_64 zstd-1.5.7-2.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-x86_64-1756249746.473895/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-g4otp2go/R-CRAN-ClustAssess/R-CRAN-ClustAssess.spec) Config(child) 0 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm) Config(fedora-43-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-1756249746.473895/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 python3-dnf-4.23.0-1.fc42.noarch python3-dnf-plugins-core-4.10.1-1.fc42.noarch dnf5-5.2.16.0-1.fc42.x86_64 dnf5-plugins-5.2.16.0-1.fc42.x86_64 Finish: chroot init Start: build phase for R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm Start: build setup for R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: Copr repository 100% | 36.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 128.6 KiB/s | 29.3 KiB | 00m00s updates 100% | 305.1 KiB/s | 31.1 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-DT noarch 0.33-1.fc43.copr9477240 copr_base 5.3 MiB R-CRAN-Gmedian x86_64 1.2.7-1.fc43.copr9472444 copr_base 215.0 KiB R-CRAN-Matrix x86_64 1.7.3-1.fc43.copr9469545 copr_base 8.2 MiB R-CRAN-RANN x86_64 2.6.2-1.fc43.copr9464525 copr_base 91.6 KiB R-CRAN-Rcpp x86_64 1.1.0-1.fc43.copr9464359 copr_base 4.3 MiB R-CRAN-RcppEigen x86_64 0.3.4.0.2-1.fc43.copr9468098 copr_base 9.0 MiB R-CRAN-Seurat x86_64 5.3.0-1.fc43.copr9483413 copr_base 3.8 MiB R-CRAN-dplyr x86_64 1.1.4-1.fc43.copr9475879 copr_base 2.6 MiB R-CRAN-fastcluster x86_64 1.3.0-1.fc43.copr9464855 copr_base 276.1 KiB R-CRAN-foreach noarch 1.5.2-1.fc43.copr9468151 copr_base 379.7 KiB R-CRAN-ggnewscale noarch 0.5.2-1.fc43.copr9196021 copr_base 607.0 KiB R-CRAN-ggplot2 noarch 3.5.2-1.fc43.copr9475878 copr_base 7.2 MiB R-CRAN-ggrastr noarch 1.0.2-1.fc43.copr9481060 copr_base 3.5 MiB R-CRAN-ggrepel x86_64 0.9.6-1.fc43.copr9477244 copr_base 454.2 KiB R-CRAN-ggtext noarch 0.1.2-1.fc43.copr9478375 copr_base 1.6 MiB R-CRAN-glue x86_64 1.8.0-1.fc43.copr9464360 copr_base 345.4 KiB R-CRAN-gprofiler2 noarch 0.2.3-1.fc43.copr9483049 copr_base 4.4 MiB R-CRAN-igraph x86_64 2.1.4-1.fc43.copr9472395 copr_base 10.2 MiB R-CRAN-jsonlite x86_64 2.0.0-1.fc43.copr9464375 copr_base 2.3 MiB R-CRAN-leiden noarch 0.4.3.1-1.fc43.copr9474379 copr_base 5.4 MiB R-CRAN-matrixStats x86_64 1.5.0-1.fc43.copr9464361 copr_base 1.0 MiB R-CRAN-paletteer noarch 1.6.0-1.fc43.copr9477895 copr_base 504.1 KiB R-CRAN-plotly noarch 4.11.0-1.fc43.copr9480159 copr_base 7.3 MiB R-CRAN-progress noarch 1.2.3-1.fc43.copr9474103 copr_base 120.5 KiB R-CRAN-qualpalr x86_64 1.0.0-1.fc43.copr9470106 copr_base 1.7 MiB R-CRAN-reshape2 x86_64 1.4.4-3.fc43.copr9474094 copr_base 224.6 KiB R-CRAN-rlang x86_64 1.1.6-1.fc43.copr9464365 copr_base 2.6 MiB R-CRAN-shiny noarch 1.11.1-1.fc43.copr9474099 copr_base 10.0 MiB R-CRAN-shinyLP noarch 1.1.3-1.fc43.copr9476141 copr_base 63.2 KiB R-CRAN-shinyWidgets noarch 0.9.0-1.fc43.copr9475923 copr_base 3.7 MiB R-CRAN-shinyjs noarch 2.1.0-1.fc43.copr9475880 copr_base 1.5 MiB R-CRAN-stringr noarch 1.5.1-1.fc43.copr9472393 copr_base 652.7 KiB R-CRAN-uwot x86_64 0.2.3-1.fc43.copr9473169 copr_base 1.8 MiB R-CRAN-vioplot noarch 0.5.1-1.fc43.copr9471047 copr_base 971.9 KiB R-core x86_64 4.5.1-3.fc43 fedora 104.0 MiB R-devel x86_64 4.5.1-3.fc43 fedora 0.0 B Installing dependencies: R-CRAN-Cairo x86_64 1.6.5-1.fc43.copr9464562 copr_base 178.9 KiB R-CRAN-DEoptimR noarch 1.1.4-1.fc43.copr9464424 copr_base 117.9 KiB R-CRAN-FNN x86_64 1.1.4.1-1.fc43.copr9464439 copr_base 236.4 KiB R-CRAN-KernSmooth x86_64 2.23.26-1.fc43.copr9466802 copr_base 147.6 KiB R-CRAN-MASS x86_64 7.3.65-1.fc43.copr9466804 copr_base 1.8 MiB R-CRAN-R6 noarch 2.6.1-1.fc43.copr9464379 copr_base 123.5 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc43.copr9464389 copr_base 63.8 KiB R-CRAN-RCurl x86_64 1.98.1.17-1.fc43.copr9468159 copr_base 2.1 MiB R-CRAN-ROCR noarch 1.0.11-1.fc43.copr9472455 copr_base 616.2 KiB R-CRAN-RSpectra x86_64 0.16.2-1.fc43.copr9470496 copr_base 1.3 MiB R-CRAN-RcppAnnoy x86_64 0.0.22-1.fc43.copr9468876 copr_base 681.2 KiB R-CRAN-RcppHNSW x86_64 0.6.0-1.fc43.copr9469168 copr_base 612.9 KiB R-CRAN-RcppTOML x86_64 0.2.3-1.fc43.copr9468400 copr_base 899.4 KiB R-CRAN-Rtsne x86_64 0.17-1.fc43.copr9468135 copr_base 262.5 KiB R-CRAN-SeuratObject x86_64 5.1.0-1.fc43.copr9475073 copr_base 3.0 MiB R-CRAN-abind noarch 1.4.8-1.fc43.copr9464363 copr_base 96.4 KiB R-CRAN-askpass x86_64 1.2.1-1.fc43.copr9468111 copr_base 36.5 KiB R-CRAN-base64enc x86_64 0.1.3-1.fc43.copr9464392 copr_base 52.2 KiB R-CRAN-beeswarm x86_64 0.4.0-1.fc43.copr9464776 copr_base 120.0 KiB R-CRAN-bitops x86_64 1.0.9-1.fc43.copr9464412 copr_base 57.9 KiB R-CRAN-bslib noarch 0.9.0-1.fc43.copr9473421 copr_base 10.9 MiB R-CRAN-caTools x86_64 1.18.3-1.fc43.copr9468149 copr_base 361.1 KiB R-CRAN-cachem x86_64 1.1.0-1.fc43.copr9469598 copr_base 102.7 KiB R-CRAN-cli x86_64 3.6.5-1.fc43.copr9464403 copr_base 2.4 MiB R-CRAN-cluster x86_64 2.1.8.1-1.fc43.copr9466798 copr_base 1.0 MiB R-CRAN-codetools noarch 0.2.20-1.fc43.copr9466800 copr_base 108.0 KiB R-CRAN-commonmark x86_64 2.0.0-1.fc43.copr9464416 copr_base 317.5 KiB R-CRAN-cowplot noarch 1.2.0-1.fc43.copr9477312 copr_base 2.1 MiB R-CRAN-crayon noarch 1.5.3-1.fc43.copr9464383 copr_base 238.3 KiB R-CRAN-crosstalk noarch 1.2.1-1.fc43.copr9470482 copr_base 1.0 MiB R-CRAN-curl x86_64 7.0.0-1.fc43.copr9464384 copr_base 2.1 MiB R-CRAN-data.table x86_64 1.17.8-1.fc43.copr9464421 copr_base 5.1 MiB R-CRAN-deldir x86_64 2.0.4-1.fc43.copr9464423 copr_base 465.6 KiB R-CRAN-digest x86_64 0.6.37-1.fc43.copr9464366 copr_base 487.9 KiB R-CRAN-dotCall64 x86_64 1.2-1.fc43.copr9464430 copr_base 73.1 KiB R-CRAN-evaluate noarch 1.0.4-1.fc43.copr9464433 copr_base 149.5 KiB R-CRAN-farver x86_64 2.1.2-1.fc43.copr9464437 copr_base 2.1 MiB R-CRAN-fastDummies noarch 1.7.5-1.fc43.copr9476037 copr_base 114.3 KiB R-CRAN-fastmap x86_64 1.2.0-1.fc43.copr9465202 copr_base 106.1 KiB R-CRAN-fitdistrplus noarch 1.2.4-1.fc43.copr9472417 copr_base 4.2 MiB R-CRAN-fontawesome noarch 0.5.3-1.fc43.copr9471671 copr_base 2.0 MiB R-CRAN-fs x86_64 1.6.6-1.fc43.copr9464442 copr_base 598.8 KiB R-CRAN-future noarch 1.67.0-1.fc43.copr9470473 copr_base 1.7 MiB R-CRAN-future.apply noarch 1.20.0-1.fc43.copr9472406 copr_base 346.9 KiB R-CRAN-generics noarch 0.1.4-1.fc43.copr9464445 copr_base 164.9 KiB R-CRAN-ggbeeswarm noarch 0.7.2-1.fc43.copr9477901 copr_base 1.8 MiB R-CRAN-ggridges noarch 0.5.6-1.fc43.copr9477236 copr_base 3.0 MiB R-CRAN-globals noarch 0.18.0-1.fc43.copr9468095 copr_base 253.9 KiB R-CRAN-goftest x86_64 1.2.3-1.fc43.copr9464448 copr_base 95.2 KiB R-CRAN-gplots noarch 3.2.0-1.fc43.copr9470517 copr_base 784.3 KiB R-CRAN-gridExtra noarch 2.3-3.fc43.copr9472394 copr_base 1.6 MiB R-CRAN-gridtext x86_64 0.1.5-1.fc43.copr9474889 copr_base 513.7 KiB R-CRAN-gtable noarch 0.3.6-1.fc43.copr9470470 copr_base 338.8 KiB R-CRAN-gtools x86_64 3.9.5-1.fc43.copr9464373 copr_base 537.8 KiB R-CRAN-here noarch 1.0.1-1.fc43.copr9468123 copr_base 139.7 KiB R-CRAN-highr noarch 0.11-1.fc43.copr9468125 copr_base 65.7 KiB R-CRAN-hms noarch 1.1.3-1.fc43.copr9472402 copr_base 133.5 KiB R-CRAN-htmltools x86_64 0.5.8.1-1.fc43.copr9468099 copr_base 526.5 KiB R-CRAN-htmlwidgets noarch 1.6.4-1.fc43.copr9475877 copr_base 2.0 MiB R-CRAN-httpuv x86_64 1.6.16-1.fc43.copr9472400 copr_base 1.1 MiB R-CRAN-httr noarch 1.4.7-1.fc43.copr9472407 copr_base 770.1 KiB R-CRAN-ica noarch 1.0.3-1.fc43.copr9465401 copr_base 128.8 KiB R-CRAN-irlba x86_64 2.3.5.1-1.fc43.copr9470487 copr_base 352.5 KiB R-CRAN-isoband x86_64 0.2.7-1.fc43.copr9465440 copr_base 1.9 MiB R-CRAN-iterators noarch 1.0.14-1.fc43.copr9464455 copr_base 440.5 KiB R-CRAN-jpeg x86_64 0.1.11-1.fc43.copr9464519 copr_base 57.7 KiB R-CRAN-jquerylib noarch 0.1.4-1.fc43.copr9471471 copr_base 1.5 MiB R-CRAN-knitr noarch 1.50-1.fc43.copr9470505 copr_base 1.7 MiB R-CRAN-labeling noarch 0.4.3-1.fc43.copr9464388 copr_base 94.4 KiB R-CRAN-later x86_64 1.4.3-1.fc43.copr9468103 copr_base 309.9 KiB R-CRAN-lattice x86_64 0.22.7-1.fc43.copr9466803 copr_base 2.0 MiB R-CRAN-lazyeval x86_64 0.2.2-3.fc43.copr9464368 copr_base 361.4 KiB R-CRAN-leidenbase x86_64 0.1.35-1.fc43.copr9475728 copr_base 557.8 KiB R-CRAN-lifecycle noarch 1.0.4-1.fc43.copr9468727 copr_base 284.4 KiB R-CRAN-listenv noarch 0.9.1-1.fc43.copr9464367 copr_base 159.7 KiB R-CRAN-litedown noarch 0.7-1.fc43.copr9470261 copr_base 485.5 KiB R-CRAN-lmtest x86_64 0.9.40-1.fc43.copr9470488 copr_base 568.6 KiB R-CRAN-magrittr x86_64 2.0.3-1.fc43.copr9464377 copr_base 415.2 KiB R-CRAN-markdown noarch 2.0-1.fc43.copr9470474 copr_base 101.3 KiB R-CRAN-memoise noarch 2.0.1-1.fc43.copr9470491 copr_base 85.3 KiB R-CRAN-mgcv x86_64 1.9.3-1.fc43.copr9471605 copr_base 4.8 MiB R-CRAN-mime x86_64 0.13-1.fc43.copr9464382 copr_base 62.1 KiB R-CRAN-miniUI noarch 0.1.2-1.fc43.copr9475882 copr_base 55.9 KiB R-CRAN-nlme x86_64 3.1.168-1.fc43.copr9469546 copr_base 3.8 MiB R-CRAN-openssl x86_64 2.3.3-1.fc43.copr9470481 copr_base 3.2 MiB R-CRAN-parallelly x86_64 1.45.1-1.fc43.copr9466817 copr_base 930.8 KiB R-CRAN-patchwork noarch 1.3.2-1.fc43.copr9488095 copr_base 4.1 MiB R-CRAN-pbapply noarch 1.7.4-1.fc43.copr9464476 copr_base 148.3 KiB R-CRAN-pillar noarch 1.11.0-1.fc43.copr9472401 copr_base 1.4 MiB R-CRAN-pkgconfig noarch 2.0.3-3.fc43.copr9464378 copr_base 34.4 KiB R-CRAN-plyr x86_64 1.8.9-1.fc43.copr9468100 copr_base 1.1 MiB R-CRAN-png x86_64 0.1.8-1.fc43.copr9464479 copr_base 70.5 KiB R-CRAN-polyclip x86_64 1.10.7-1.fc43.copr9464481 copr_base 241.3 KiB R-CRAN-prettyunits noarch 1.2.0-1.fc43.copr9464404 copr_base 190.4 KiB R-CRAN-prismatic noarch 1.1.2-1.fc43.copr9469135 copr_base 1.6 MiB R-CRAN-progressr noarch 0.15.1-1.fc43.copr9469395 copr_base 1.5 MiB R-CRAN-promises x86_64 1.3.3-1.fc43.copr9470478 copr_base 2.6 MiB R-CRAN-purrr x86_64 1.1.0-1.fc43.copr9472396 copr_base 956.0 KiB R-CRAN-ragg x86_64 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x86_64 2.11.1-1.fc43.copr9468163 copr_base 3.6 MiB R-CRAN-spatstat.data noarch 3.1.8-1.fc43.copr9470509 copr_base 4.4 MiB R-CRAN-spatstat.explore x86_64 3.5.2-1.fc43.copr9476836 copr_base 5.4 MiB R-CRAN-spatstat.geom x86_64 3.5.0-1.fc43.copr9473417 copr_base 6.7 MiB R-CRAN-spatstat.random x86_64 3.4.1-1.fc43.copr9475224 copr_base 1.9 MiB R-CRAN-spatstat.sparse x86_64 3.1.0-1.fc43.copr9471528 copr_base 313.5 KiB R-CRAN-spatstat.univar x86_64 3.1.4-1.fc43.copr9470209 copr_base 562.6 KiB R-CRAN-spatstat.utils x86_64 3.1.5-1.fc43.copr9464503 copr_base 634.6 KiB R-CRAN-stringi x86_64 1.8.7-1.fc43.copr9464391 copr_base 2.0 MiB R-CRAN-survival x86_64 3.8.3-1.fc43.copr9471606 copr_base 9.9 MiB R-CRAN-sys x86_64 3.4.3-1.fc43.copr9464396 copr_base 76.1 KiB R-CRAN-systemfonts x86_64 1.2.3-1.fc43.copr9470974 copr_base 642.8 KiB R-CRAN-tensor noarch 1.5.1-1.fc43.copr9464510 copr_base 20.9 KiB R-CRAN-textshaping x86_64 1.0.1-1.fc43.copr9473362 copr_base 398.2 KiB R-CRAN-tibble x86_64 3.3.0-1.fc43.copr9474097 copr_base 1.7 MiB R-CRAN-tidyr x86_64 1.3.1-1.fc43.copr9477238 copr_base 1.9 MiB R-CRAN-tidyselect noarch 1.2.1-1.fc43.copr9472397 copr_base 437.2 KiB R-CRAN-tinytex noarch 0.57-1.fc43.copr9468141 copr_base 192.3 KiB R-CRAN-utf8 x86_64 1.2.6-1.fc43.copr9464395 copr_base 478.8 KiB R-CRAN-vctrs x86_64 0.6.5-1.fc43.copr9470480 copr_base 2.4 MiB R-CRAN-vipor noarch 0.4.7-1.fc43.copr9465994 copr_base 4.6 MiB R-CRAN-viridisLite noarch 0.4.2-1.fc43.copr9464369 copr_base 1.3 MiB R-CRAN-withr noarch 3.0.2-1.fc43.copr9464370 copr_base 397.2 KiB R-CRAN-xfun x86_64 0.53-1.fc43.copr9464381 copr_base 974.9 KiB R-CRAN-xml2 x86_64 1.4.0-1.fc43.copr9468144 copr_base 510.3 KiB R-CRAN-xtable noarch 1.8.4-3.fc43.copr9464374 copr_base 898.4 KiB R-CRAN-yaml x86_64 2.3.10-1.fc43.copr9464387 copr_base 272.2 KiB R-CRAN-zoo x86_64 1.8.14-1.fc43.copr9468096 copr_base 1.5 MiB R-core-devel x86_64 4.5.1-3.fc43 fedora 410.9 KiB R-java x86_64 4.5.1-3.fc43 fedora 0.0 B R-java-devel x86_64 4.5.1-3.fc43 fedora 0.0 B R-littler x86_64 0.3.19-9.fc43 fedora 162.0 KiB R-rpm-macros noarch 1.2.1-13.fc43 fedora 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB alsa-lib x86_64 1.2.14-4.fc43 fedora 1.4 MiB annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc x86_64 12.99-1.fc43 fedora 1.0 MiB avahi-libs x86_64 0.9~rc2-6.fc43 fedora 171.6 KiB bzip2-devel x86_64 1.0.8-21.fc43 fedora 309.8 KiB cairo x86_64 1.18.4-2.fc43 fedora 1.8 MiB cmake-filesystem x86_64 3.31.6-4.fc43 fedora 0.0 B cpp x86_64 15.2.1-1.fc43.1 fedora 37.9 MiB cups-filesystem noarch 1:2.4.12-4.fc43 fedora 0.0 B cups-libs x86_64 1:2.4.12-4.fc43 fedora 618.7 KiB dbus-libs x86_64 1:1.16.0-4.fc43 fedora 345.5 KiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB desktop-file-utils x86_64 0.28-2.fc43 fedora 218.4 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B flexiblas x86_64 3.4.5-4.fc43 fedora 50.4 KiB flexiblas-devel x86_64 3.4.5-4.fc43 fedora 4.9 MiB flexiblas-netlib x86_64 3.4.5-4.fc43 fedora 10.9 MiB flexiblas-netlib64 x86_64 3.4.5-4.fc43 fedora 11.0 MiB flexiblas-openblas-openmp x86_64 3.4.5-4.fc43 fedora 39.2 KiB flexiblas-openblas-openmp64 x86_64 3.4.5-4.fc43 fedora 39.2 KiB fontconfig x86_64 2.17.0-3.fc43 fedora 765.9 KiB fonts-filesystem noarch 1:2.0.5-23.fc43 fedora 0.0 B freetype x86_64 2.13.3-3.fc43 fedora 850.2 KiB fribidi x86_64 1.0.16-3.fc43 fedora 190.3 KiB gcc x86_64 15.2.1-1.fc43.1 fedora 111.8 MiB gcc-c++ x86_64 15.2.1-1.fc43.1 fedora 41.3 MiB gcc-gfortran x86_64 15.2.1-1.fc43.1 fedora 40.3 MiB gcc-plugin-annobin x86_64 15.2.1-1.fc43.1 fedora 57.2 KiB glib2 x86_64 2.85.4-1.fc43 fedora 14.7 MiB glibc-devel x86_64 2.42-4.fc43 fedora 2.3 MiB glpk x86_64 5.0-14.fc43 fedora 906.6 KiB google-noto-fonts-common noarch 20250801-4.fc43 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250801-4.fc43 fedora 1.4 MiB graphite2 x86_64 1.3.14-19.fc43 fedora 191.8 KiB harfbuzz x86_64 11.4.1-1.fc43 fedora 2.8 MiB harfbuzz-icu x86_64 11.4.1-1.fc43 fedora 15.4 KiB java-25-openjdk x86_64 1:25.0.0.0.32-0.4.ea.fc43 fedora 948.1 KiB java-25-openjdk-devel x86_64 1:25.0.0.0.32-0.4.ea.fc43 fedora 11.6 MiB java-25-openjdk-headless x86_64 1:25.0.0.0.32-0.4.ea.fc43 fedora 236.2 MiB javapackages-filesystem noarch 6.4.1-3.fc43 fedora 2.0 KiB jbigkit-libs x86_64 2.1-32.fc43 fedora 113.5 KiB kernel-headers x86_64 6.17.0-0.rc3.31.fc43 fedora 6.7 MiB less x86_64 679-2.fc43 fedora 406.1 KiB libICE x86_64 1.1.2-3.fc43 fedora 194.4 KiB libRmath x86_64 4.5.1-3.fc43 fedora 242.7 KiB libRmath-devel x86_64 4.5.1-3.fc43 fedora 19.9 KiB libSM x86_64 1.2.5-3.fc43 fedora 101.0 KiB libX11 x86_64 1.8.12-1.fc43 fedora 1.3 MiB libX11-common noarch 1.8.12-1.fc43 fedora 1.2 MiB libX11-devel x86_64 1.8.12-1.fc43 fedora 1.0 MiB libX11-xcb x86_64 1.8.12-1.fc43 fedora 10.9 KiB libXau x86_64 1.0.12-3.fc43 fedora 72.9 KiB libXau-devel x86_64 1.0.12-3.fc43 fedora 7.5 KiB libXcomposite x86_64 0.4.6-6.fc43 fedora 40.5 KiB libXext x86_64 1.3.6-4.fc43 fedora 90.0 KiB libXft x86_64 2.3.8-9.fc43 fedora 164.4 KiB libXi x86_64 1.8.2-3.fc43 fedora 80.6 KiB libXmu x86_64 1.2.1-4.fc43 fedora 191.3 KiB libXrender x86_64 0.9.12-3.fc43 fedora 46.0 KiB libXt x86_64 1.3.1-3.fc43 fedora 429.8 KiB libXtst x86_64 1.2.5-3.fc43 fedora 33.5 KiB libdatrie x86_64 0.2.13-12.fc43 fedora 53.8 KiB libdeflate x86_64 1.24-2.fc43 fedora 123.0 KiB libdeflate-devel x86_64 1.24-2.fc43 fedora 26.0 KiB libfontenc x86_64 1.1.8-4.fc43 fedora 66.9 KiB libgfortran x86_64 15.2.1-1.fc43.1 fedora 3.4 MiB libicu x86_64 77.1-1.fc43 fedora 36.4 MiB libicu-devel x86_64 77.1-1.fc43 fedora 5.0 MiB libjpeg-turbo x86_64 3.1.1-2.fc43 fedora 799.5 KiB liblerc x86_64 4.0.0-9.fc43 fedora 624.1 KiB libmpc x86_64 1.3.1-8.fc43 fedora 160.6 KiB libpng x86_64 2:1.6.50-2.fc43 fedora 237.7 KiB libquadmath x86_64 15.2.1-1.fc43.1 fedora 317.9 KiB libquadmath-devel x86_64 15.2.1-1.fc43.1 fedora 22.2 KiB libstdc++-devel x86_64 15.2.1-1.fc43.1 fedora 37.3 MiB libthai x86_64 0.1.29-11.fc43 fedora 783.4 KiB libtiff x86_64 4.7.0-8.fc43 fedora 619.0 KiB libtirpc x86_64 1.3.7-0.fc43 fedora 198.9 KiB libtirpc-devel x86_64 1.3.7-0.fc43 fedora 251.6 KiB libtommath x86_64 1.3.1~rc1-6.fc43 fedora 126.4 KiB libwebp x86_64 1.6.0-2.fc43 fedora 956.6 KiB libxcb x86_64 1.17.0-6.fc43 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-6.fc43 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.38-8.fc43 fedora 30.8 KiB libyaml x86_64 0.2.5-17.fc43 fedora 134.6 KiB libzstd-devel x86_64 1.5.7-2.fc43 fedora 208.0 KiB lksctp-tools x86_64 1.0.20-3.fc43 fedora 250.3 KiB lzo x86_64 2.10-15.fc43 fedora 178.9 KiB make x86_64 1:4.4.1-11.fc43 fedora 1.8 MiB mkfontscale x86_64 1.2.3-3.fc43 fedora 45.0 KiB nspr x86_64 4.37.0-2.fc43 fedora 315.5 KiB nss x86_64 3.114.0-2.fc43 fedora 1.9 MiB nss-softokn x86_64 3.114.0-2.fc43 fedora 1.9 MiB nss-softokn-freebl x86_64 3.114.0-2.fc43 fedora 848.4 KiB nss-sysinit x86_64 3.114.0-2.fc43 fedora 18.1 KiB nss-util x86_64 3.114.0-2.fc43 fedora 200.8 KiB openblas x86_64 0.3.29-2.fc43 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-2.fc43 fedora 43.7 MiB openblas-openmp64 x86_64 0.3.29-2.fc43 fedora 43.8 MiB pandoc x86_64 3.6.4-37.fc43 fedora 203.5 MiB pandoc-common noarch 3.6.4-36.fc43 fedora 2.0 MiB pango x86_64 1.56.4-2.fc43 fedora 1.0 MiB pcre2-devel x86_64 10.45-1.fc43.1 fedora 2.1 MiB pcre2-utf16 x86_64 10.45-1.fc43.1 fedora 626.3 KiB pcre2-utf32 x86_64 10.45-1.fc43.1 fedora 598.2 KiB pixman x86_64 0.46.2-2.fc43 fedora 710.3 KiB suitesparse x86_64 7.11.0-1.fc43 fedora 45.5 MiB tcl x86_64 1:9.0.2-1.fc43 fedora 4.3 MiB tk x86_64 1:9.0.2-1.fc43 fedora 3.8 MiB tre x86_64 0.9.0-2.fc43 fedora 75.8 KiB tre-common noarch 0.9.0-2.fc43 fedora 75.8 KiB tre-devel x86_64 0.9.0-2.fc43 fedora 13.2 KiB ttmkfdir x86_64 3.0.9-73.fc43 fedora 122.5 KiB tzdata noarch 2025b-3.fc43 fedora 1.6 MiB tzdata-java noarch 2025b-3.fc43 fedora 100.1 KiB xdg-utils noarch 1.2.1-4.fc43 fedora 346.3 KiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-41.fc43 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-5.fc43 fedora 1.7 MiB xz-devel x86_64 1:5.8.1-2.fc43 fedora 258.8 KiB zlib-ng x86_64 2.2.5-1.fc43 fedora 157.0 KiB zlib-ng-compat-devel x86_64 2.2.5-1.fc43 fedora 107.0 KiB Transaction Summary: Installing: 305 packages Total size of inbound packages is 475 MiB. 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Finish: build setup for R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm Start: rpmbuild R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.PaOq05 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.GNzZ1d + umask 022 + cd /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + cd /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + rm -rf ClustAssess + /usr/bin/mkdir -p ClustAssess + cd ClustAssess + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ClustAssess_1.1.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d ClustAssess/src ']' + find ClustAssess/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d ClustAssess/src ']' + find 'ClustAssess/src/Make*' -type f -exec sed -i s@-g0@@g '{}' ';' find: ‘ClustAssess/src/Make*’: No such file or directory + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ve3Mr0 + umask 022 + cd /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ClustAssess + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RieFyK + umask 022 + cd /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + '[' /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + mkdir /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ClustAssess + mkdir -p /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT/usr/local/lib/R/library ClustAssess * installing *source* package ‘ClustAssess’ ... ** this is package ‘ClustAssess’ version ‘1.1.0’ file ‘inst/CITATION’ has the wrong MD5 checksum ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.2.1 20250808 (Red Hat 15.2.1-1)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ RcppExports.cpp:98:71: required from here 98 | rcpp_result_gen = Rcpp::wrap(getNNmatrix(nnRanked, k, start, prune)); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ RcppExports.cpp:98:71: required from here 98 | rcpp_result_gen = Rcpp::wrap(getNNmatrix(nnRanked, k, start, prune)); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ 77 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ 132 | assign_sparse_to_sparse(dst.derived(), src.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ 713 | *this = other.derived(); | ~~~~~~^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ 387 | return ans; | ^~~ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ 89 | return exporter.get(); | ~~~~~~~~~~~~^~ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ 152 | return internal::as(x, typename traits::r_type_traits::r_category()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ 34 | inline operator T() { return as(x) ; } | ~~~~~^~~ RcppExports.cpp:73:43: required from here 73 | rcpp_result_gen = Rcpp::wrap(pruneSNN(snnMatrix, prune)); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c calculate_ecs.cpp -o calculate_ecs.o calculate_ecs.cpp: In function ‘double disjointECSaverage(Rcpp::IntegerVector, Rcpp::IntegerVector)’: calculate_ecs.cpp:52:13: warning: unused variable ‘cluster1’ [-Wunused-variable] 52 | int cluster1, cluster2; | ^~~~~~~~ calculate_ecs.cpp:52:23: warning: unused variable ‘cluster2’ [-Wunused-variable] 52 | int cluster1, cluster2; | ^~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c calculate_pac.cpp -o calculate_pac.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c optimise_snn.cpp -o optimise_snn.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from optimise_snn.cpp:2: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ 22 | class SparseTransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ 45 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ optimise_snn.cpp:58:66: required from here 58 | Eigen::SparseMatrix SNN = nnMatrix * (nnMatrix.transpose()); | ~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, Eigen::Transpose >, 2> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:145:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 2, Eigen::Sparse>’ 145 | class ProductImpl : public internal::generic_xpr_base, MatrixXpr, StorageKind>::type | ^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ optimise_snn.cpp:58:68: required from here 58 | Eigen::SparseMatrix SNN = nnMatrix * (nnMatrix.transpose()); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ optimise_snn.cpp:92:87: required from here 92 | List getNNmatrix(Eigen::MatrixXd nnRanked, int k = -1, int start = 0, double prune = 0) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ optimise_snn.cpp:92:87: required from here 92 | List getNNmatrix(Eigen::MatrixXd nnRanked, int k = -1, int start = 0, double prune = 0) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:96:8: required from ‘struct Eigen::internal::product_evaluator, Eigen::Transpose >, 2>, 8, Eigen::SparseShape, Eigen::SparseShape, double, double>’ 96 | struct product_evaluator, ProductTag, LhsShape, RhsShape> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: required from ‘struct Eigen::internal::evaluator, Eigen::Transpose >, 2> >’ 29 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 687 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ optimise_snn.cpp:58:45: required from here 58 | Eigen::SparseMatrix SNN = nnMatrix * (nnMatrix.transpose()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1040:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1040 | SparseMatrix trMat(mat.rows(),mat.cols()); | ^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ optimise_snn.cpp:114:20: required from here 114 | NN.setFromTriplets(tripletList.begin(), tripletList.end()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1063 | mat = trMat; | ~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ optimise_snn.cpp:114:20: required from here 114 | NN.setFromTriplets(tripletList.begin(), tripletList.end()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c update_connectivity.cpp -o update_connectivity.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c wilcox.cpp -o wilcox.o wilcox.cpp: In function ‘Rcpp::NumericVector wilcox_test(Rcpp::IntegerMatrix, int, int)’: wilcox.cpp:42:13: warning: unused variable ‘max’ [-Wunused-variable] 42 | int max = 0; | ^~~ g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o ClustAssess.so RcppExports.o calculate_ecs.o calculate_pac.o optimise_snn.o update_connectivity.o wilcox.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT/usr/local/lib/R/library/00LOCK-ClustAssess/00new/ClustAssess/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ClustAssess’ finding HTML links ... done Clustering-class html add_metadata html assess_clustering_stability html assess_feature_stability html assess_nn_stability html automatic_stability_assessment html calculate_markers html calculate_markers_shiny html choose_stable_clusters html consensus_cluster html create_clustering html create_monocle_default html create_monocle_from_clustassess html create_monocle_from_clustassess_app html create_seurat_object_default html create_seurat_object_from_clustassess_app html element_agreement html element_consistency html element_sim html element_sim_elscore html element_sim_matrix html getNNmatrix html get_clusters_from_clustassess_object html get_colour_vector_from_palette html get_highest_prune_param html get_highest_prune_param_embedding html get_nn_conn_comps html length-Clustering-method html marker_overlap html merge_partitions html merge_resolutions html pac_convergence html pac_landscape html plot_clust_hierarchical html plot_clustering_difference_facet html plot_clustering_overall_stability html plot_clustering_per_value_stability html plot_connected_comps_evolution html plot_feature_overall_stability_boxplot html plot_feature_overall_stability_incremental html plot_feature_per_resolution_stability_boxplot html plot_feature_per_resolution_stability_incremental html plot_feature_stability_ecs_facet html plot_feature_stability_mb_facet html plot_k_n_partitions html plot_k_resolution_corresp html plot_n_neigh_ecs html plot_n_neigh_k_correspondence html print-Clustering-method html server_comparisons html server_dimensionality_reduction html server_graph_clustering html server_graph_construction html server_landing_page html server_sandbox html ui_comparisons html ui_dimensionality_reduction html ui_graph_clustering html ui_graph_construction html ui_landing_page html ui_sandbox html weighted_element_consistency html write_objects html write_shiny_app html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClustAssess) + test -d ClustAssess/src + cd ClustAssess/src + rm -f RcppExports.o calculate_ecs.o calculate_pac.o optimise_snn.o update_connectivity.o wilcox.o ClustAssess.so + rm -f /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.1.0-1.fc43.copr9484890 --unique-debug-suffix -1.1.0-1.fc43.copr9484890.x86_64 --unique-debug-src-base R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/ClustAssess find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64/ClustAssess/src/wilcox.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64/ClustAssess/src/update_connectivity.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64/ClustAssess/src/optimise_snn.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64/ClustAssess/src/calculate_pac.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64/ClustAssess/src/calculate_ecs.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64/ClustAssess/src/RcppExports.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/ClustAssess/CITATION is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT Handler jar skipped: jar handler requires $SOURCE_DATE_EPOCH to be set Handler gzip skipped: gzip handler requires $SOURCE_DATE_EPOCH to be set Handler zip skipped: zip handler requires $SOURCE_DATE_EPOCH to be set Scanned 26 directories and 170 files, processed 141 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64 Provides: R-CRAN-ClustAssess = 1.1.0-1.fc43.copr9484890 R-CRAN-ClustAssess(x86-64) = 1.1.0-1.fc43.copr9484890 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-ClustAssess-debugsource-1.1.0-1.fc43.copr9484890.x86_64 Provides: R-CRAN-ClustAssess-debugsource = 1.1.0-1.fc43.copr9484890 R-CRAN-ClustAssess-debugsource(x86-64) = 1.1.0-1.fc43.copr9484890 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-ClustAssess-debuginfo-1.1.0-1.fc43.copr9484890.x86_64 Provides: R-CRAN-ClustAssess-debuginfo = 1.1.0-1.fc43.copr9484890 R-CRAN-ClustAssess-debuginfo(x86-64) = 1.1.0-1.fc43.copr9484890 debuginfo(build-id) = edc662dbc493072483088d32e6e712447a4c72d0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-ClustAssess-debugsource(x86-64) = 1.1.0-1.fc43.copr9484890 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-ClustAssess-debugsource-1.1.0-1.fc43.copr9484890.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-ClustAssess-debuginfo-1.1.0-1.fc43.copr9484890.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.pENQqw + umask 022 + cd /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + test -d /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + rm -rf /builddir/build/BUILD/R-CRAN-ClustAssess-1.1.0-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm Finish: build phase for R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-x86_64-1756249746.473895/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-ClustAssess-1.1.0-1.fc43.copr9484890.src.rpm) Config(child) 0 minutes 38 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-ClustAssess-debugsource", "epoch": null, "version": "1.1.0", "release": "1.fc43.copr9484890", "arch": "x86_64" }, { "name": "R-CRAN-ClustAssess", "epoch": null, "version": "1.1.0", "release": "1.fc43.copr9484890", "arch": "src" }, { "name": "R-CRAN-ClustAssess", "epoch": null, "version": "1.1.0", "release": "1.fc43.copr9484890", "arch": "x86_64" }, { "name": "R-CRAN-ClustAssess-debuginfo", "epoch": null, "version": "1.1.0", "release": "1.fc43.copr9484890", "arch": "x86_64" } ] } RPMResults finished