%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  BoneDensityMapping
%global packver   0.1.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.3
Release:          1%{?dist}%{?buildtag}
Summary:          Maps Bone Densities from CT Scans to Surface Models

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-cowplot 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-oro.nifti 
BuildRequires:    R-CRAN-ptinpoly 
BuildRequires:    R-CRAN-rdist 
BuildRequires:    R-CRAN-rjson 
BuildRequires:    R-CRAN-concaveman 
BuildRequires:    R-CRAN-geometry 
BuildRequires:    R-CRAN-sp 
BuildRequires:    R-CRAN-rgl 
BuildRequires:    R-CRAN-RNifti 
BuildRequires:    R-CRAN-Rvcg 
BuildRequires:    R-CRAN-FNN 
BuildRequires:    R-CRAN-nat 
Requires:         R-CRAN-cowplot 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggpubr 
Requires:         R-methods 
Requires:         R-CRAN-oro.nifti 
Requires:         R-CRAN-ptinpoly 
Requires:         R-CRAN-rdist 
Requires:         R-CRAN-rjson 
Requires:         R-CRAN-concaveman 
Requires:         R-CRAN-geometry 
Requires:         R-CRAN-sp 
Requires:         R-CRAN-rgl 
Requires:         R-CRAN-RNifti 
Requires:         R-CRAN-Rvcg 
Requires:         R-CRAN-FNN 
Requires:         R-CRAN-nat 

%description
Allows local bone density estimates to be derived from CT data and mapped
to 3D bone models in a reproducible manner. Processing can be performed at
the individual bone or group level. Also includes tools for visualizing
the bone density estimates. Example methods are described in Telfer et
al., (2021) <doi:10.1002/jor.24792>, Telfer et al., (2021)
<doi:10.1016/j.jse.2021.05.011>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}