%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname stelfi %global packver 1.0.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.0.2 Release: 1%{?dist}%{?buildtag} Summary: Hawkes and Log-Gaussian Cox Point Processes Using Template Model Builder License: GPL (>= 3) URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.5.0 Requires: R-core >= 4.5.0 BuildRequires: R-CRAN-ggplot2 >= 3.4.3 BuildRequires: R-CRAN-gridExtra >= 2.3 BuildRequires: R-CRAN-TMB >= 1.9.6 BuildRequires: R-CRAN-tidyr >= 1.3.1 BuildRequires: R-CRAN-dplyr >= 1.1.3 BuildRequires: R-CRAN-sf >= 1.0.14 BuildRequires: R-CRAN-fmesher BuildRequires: R-CRAN-Matrix BuildRequires: R-CRAN-RcppEigen Requires: R-CRAN-ggplot2 >= 3.4.3 Requires: R-CRAN-gridExtra >= 2.3 Requires: R-CRAN-TMB >= 1.9.6 Requires: R-CRAN-tidyr >= 1.3.1 Requires: R-CRAN-dplyr >= 1.1.3 Requires: R-CRAN-sf >= 1.0.14 Requires: R-CRAN-fmesher Requires: R-CRAN-Matrix %description Fit Hawkes and log-Gaussian Cox process models with extensions. Introduced in Hawkes (1971) a Hawkes process is a self-exciting temporal point process where the occurrence of an event immediately increases the chance of another. We extend this to consider self-inhibiting process and a non-homogeneous background rate. A log-Gaussian Cox process is a Poisson point process where the log-intensity is given by a Gaussian random field. We extend this to a joint likelihood formulation fitting a marked log-Gaussian Cox model. In addition, the package offers functionality to fit self-exciting spatiotemporal point processes. Models are fitted via maximum likelihood using 'TMB' (Template Model Builder). Where included 1) random fields are assumed to be Gaussian and are integrated over using the Laplace approximation and 2) a stochastic partial differential equation model, introduced by Lindgren, Rue, and Lindström. (2011) , is defined for the field(s). %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}