%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PUGMM
%global packver   0.1.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.2
Release:          1%{?dist}%{?buildtag}
Summary:          Parsimonious Ultrametric Gaussian Mixture Models

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0
Requires:         R-core >= 4.0
BuildRequires:    R-CRAN-ClusterR 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-ManlyMix 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-mclust 
BuildRequires:    R-CRAN-mcompanion 
BuildRequires:    R-CRAN-ppclust 
BuildRequires:    R-CRAN-Rcpp 
Requires:         R-CRAN-ClusterR 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-ManlyMix 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-mclust 
Requires:         R-CRAN-mcompanion 
Requires:         R-CRAN-ppclust 
Requires:         R-CRAN-Rcpp 

%description
Parsimonious Ultrametric Gaussian Mixture Models via grouped coordinate
ascent (equivalent to EM) algorithm characterized by the inspection of
hierarchical relationships among variables via parsimonious extended
ultrametric covariance structures. The methodologies are described in
Cavicchia, Vichi, Zaccaria (2024) <doi:10.1007/s11222-024-10405-9>, (2022)
<doi:10.1007/s11634-021-00488-x> and (2020)
<doi:10.1007/s11634-020-00400-z>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}