%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  flassomsm
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Penalized Estimation for Multi-State Models with Lasso and Fused Penalties

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-corpcor 
BuildRequires:    R-CRAN-future 
BuildRequires:    R-CRAN-future.apply 
BuildRequires:    R-CRAN-glmnet 
BuildRequires:    R-CRAN-mstate 
BuildRequires:    R-CRAN-numDeriv 
BuildRequires:    R-CRAN-penalized 
BuildRequires:    R-CRAN-progress 
BuildRequires:    R-CRAN-progressr 
BuildRequires:    R-CRAN-survival 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-corpcor 
Requires:         R-CRAN-future 
Requires:         R-CRAN-future.apply 
Requires:         R-CRAN-glmnet 
Requires:         R-CRAN-mstate 
Requires:         R-CRAN-numDeriv 
Requires:         R-CRAN-penalized 
Requires:         R-CRAN-progress 
Requires:         R-CRAN-progressr 
Requires:         R-CRAN-survival 

%description
Provides a suite of methods for detecting influential subjects in
longitudinal datasets, particularly when observations occur at irregular
time points. The methods identify individuals whose response trajectories
deviate significantly from the population pattern, enabling detection of
anomalies or subjects exerting undue influence on model outcomes.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}