%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  CimpleG
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          A Method to Identify Single CpG Sites for Classification and Deconvolution

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-archive 
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-CRAN-broom 
BuildRequires:    R-CRAN-butcher 
BuildRequires:    R-CRAN-caret 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-devtools 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-forcats 
BuildRequires:    R-CRAN-ggExtra 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-ggsci 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-gtools 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-nnls 
BuildRequires:    R-CRAN-OneR 
BuildRequires:    R-CRAN-parsnip 
BuildRequires:    R-CRAN-patchwork 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-recipes 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rsample 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tictoc 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-CRAN-tsutils 
BuildRequires:    R-CRAN-tune 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-vroom 
BuildRequires:    R-CRAN-workflows 
BuildRequires:    R-CRAN-yardstick 
Requires:         R-CRAN-archive 
Requires:         R-CRAN-assertthat 
Requires:         R-CRAN-broom 
Requires:         R-CRAN-butcher 
Requires:         R-CRAN-caret 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-devtools 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-forcats 
Requires:         R-CRAN-ggExtra 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-ggsci 
Requires:         R-grDevices 
Requires:         R-CRAN-gtools 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-matrixStats 
Requires:         R-methods 
Requires:         R-CRAN-nnls 
Requires:         R-CRAN-OneR 
Requires:         R-CRAN-parsnip 
Requires:         R-CRAN-patchwork 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-recipes 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rsample 
Requires:         R-CRAN-scales 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tictoc 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tidyselect 
Requires:         R-CRAN-tsutils 
Requires:         R-CRAN-tune 
Requires:         R-utils 
Requires:         R-CRAN-vroom 
Requires:         R-CRAN-workflows 
Requires:         R-CRAN-yardstick 

%description
DNA methylation signatures are usually based on multivariate approaches
that require hundreds of sites for predictions.  'CimpleG' is a method for
the detection of small CpG methylation signatures used for cell-type
classification and deconvolution.  'CimpleG' is time efficient and
performs as well as top performing methods for cell-type classification of
blood cells and other somatic cells, while basing its prediction on a
single DNA methylation site per cell type (but users can also select more
sites if they so wish).  Users can train cell type classifiers ('CimpleG'
based, and others) and directly apply these in a deconvolution of cell
mixes context.  Altogether, 'CimpleG' provides a complete computational
framework for the delineation of DNAm signatures and cellular
deconvolution.  For more details see Maié et al. (2023)
<doi:10.1186/s13059-023-03000-0>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}