R: Visualize Plate Layout (Heatmap)

view_plate {PlateVision}

R Documentation

Visualize Plate Layout (Heatmap)

Description

Creates a physical map of the 96-well plate colored by Ct value or Sample.

Usage

view_plate(data, fill_var = "Ct", interactive = FALSE)

Arguments

data

The dataframe output from import_plate().

fill_var

The column to color the wells by (e.g., "Ct", "Sample", "Gene").

interactive

If TRUE, returns a plotly interactive graph. If FALSE, returns static ggplot.

Value

A ggplot object or plotly object.

Examples

# Create dummy data representing a partial plate
dummy_data <- data.frame(
  Well = c("A1", "A2", "A3", "B1", "B2", "B3"),
  Ct = c(20, 20.5, 19.8, 25, 24.5, 26),
  Sample = c(rep("Control", 3), rep("Treated", 3)),
  Gene = "GAPDH"
)

# View static heatmap
view_plate(dummy_data, fill_var = "Ct")

# View interactive heatmap (if library plotly is available)
view_plate(dummy_data, fill_var = "Sample", interactive = FALSE)

[Package PlateVision version 0.1.0 Index]