%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  rtmsEcho
%global packver   0.2.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.4
Release:          1%{?dist}%{?buildtag}
Summary:          Extract and Analyze EchoMS Data from Sciex Wiff Files

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-rtms 
Requires:         R-CRAN-rtms 

%description
Read raw and processed data from acoustic ejection mass spectrometry
(AEMS) files produced by the Sciex EchoMS instrument.  Includes functions
to create interactive reader objects, extract raw intensity measurements,
mass spectra, and fully-processed mass-transition intensity areas.
Methods for data processing and analysis are described in Rimmer et al.
(2025) <doi:10.1021/acs.analchem.5c03730>. Supports both multiple reaction
monitoring (MRM) and full-scan (neutral loss and precursor ion) data
formats.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}