%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  pmrm
%global packver   0.0.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.0.4
Release:          1%{?dist}%{?buildtag}
Summary:          Progression Models for Repeated Measures

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-RTMB >= 1.8
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-generics 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-nlme 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-vctrs 
Requires:         R-CRAN-RTMB >= 1.8
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-generics 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-nlme 
Requires:         R-CRAN-rlang 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyselect 
Requires:         R-utils 
Requires:         R-CRAN-vctrs 

%description
A progression model for repeated measures (PMRM) is a continuous-time
nonlinear mixed-effects model for longitudinal clinical trials in
progressive diseases. Unlike mixed models for repeated measures (MMRMs),
which estimate treatment effects as linear combinations of additive
effects on the outcome scale, PMRMs characterize treatment effects in
terms of the underlying disease trajectory. This framing yields clinically
interpretable quantities such as average time saved and percent reduction
in decline due to treatment. This package implements frequentist PMRMs by
Raket (2022) <doi:10.1002/sim.9581> using 'RTMB' by Kristensen (2016)
<doi:10.18637/jss.v070.i05>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}