%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  graphPAF
%global packver   2.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Estimating and Displaying Population Attributable Fractions

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-boot 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-gtools 
BuildRequires:    R-CRAN-madness 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-splines 
BuildRequires:    R-CRAN-survival 
Requires:         R-CRAN-boot 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-gtools 
Requires:         R-CRAN-madness 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-reshape2 
Requires:         R-splines 
Requires:         R-CRAN-survival 

%description
Estimation and display of various types of population attributable
fraction and impact fractions. As well as the usual calculations of
attributable fractions and impact fractions, functions are provided for
attributable fraction nomograms and fan plots, continuous exposures, for
pathway specific population attributable fractions, and for joint, average
and sequential population attributable fractions.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}