%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  pguIMP
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Visually Guided Preprocessing of Bioanalytical Laboratory Data

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-R6 >= 2.4.1
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-DataVisualizations 
BuildRequires:    R-CRAN-dbscan 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-e1071 
BuildRequires:    R-CRAN-finalfit 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggthemes 
BuildRequires:    R-CRAN-Hmisc 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-RWeka 
BuildRequires:    R-CRAN-VIM 
BuildRequires:    R-CRAN-bbmle 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-mice 
BuildRequires:    R-CRAN-nortest 
BuildRequires:    R-CRAN-outliers 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-psych 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rcompanion 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rmarkdown 
BuildRequires:    R-CRAN-robust 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-tools 
BuildRequires:    R-CRAN-writexl 
Requires:         R-CRAN-R6 >= 2.4.1
Requires:         R-CRAN-DT 
Requires:         R-CRAN-DataVisualizations 
Requires:         R-CRAN-dbscan 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-e1071 
Requires:         R-CRAN-finalfit 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggthemes 
Requires:         R-CRAN-Hmisc 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-RWeka 
Requires:         R-CRAN-VIM 
Requires:         R-CRAN-bbmle 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-mice 
Requires:         R-CRAN-nortest 
Requires:         R-CRAN-outliers 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-psych 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rcompanion 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rmarkdown 
Requires:         R-CRAN-robust 
Requires:         R-CRAN-shiny 
Requires:         R-stats 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tidyselect 
Requires:         R-tools 
Requires:         R-CRAN-writexl 

%description
Reproducible cleaning of biomedical laboratory data using visualization,
error correction, and transformation methods implemented as interactive R
notebooks. A detailed description of the methods ca ben found in Malkusch,
S., Hahnefeld, L., Gurke, R. and J. Lotsch. (2021)
<doi:10.1002/psp4.12704>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}