%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  orsk
%global packver   1.0-9
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.9
Release:          1%{?dist}%{?buildtag}
Summary:          Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildRequires:    R-CRAN-BB 
Requires:         R-CRAN-BB 

%description
Reconstructs plausible 2 by 2 contingency tables from published
cohort-study summaries when the original cell counts are unavailable.
Given group sample sizes and an odds ratio with partial confidence
interval information, the package searches for compatible event counts,
then derives corresponding relative risks and confidence intervals. It
implements the methods described in Wang (2013)
<doi:10.18637/jss.v055.i05> and includes summary and plotting methods for
reviewing admissible scenarios.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}