%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  CLRtools
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Diagnostic Tools for Logistic and Conditional Logistic Regression

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-bayesplot 
BuildRequires:    R-CRAN-caret 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-CRAN-lmtest 
BuildRequires:    R-CRAN-loo 
BuildRequires:    R-CRAN-patchwork 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rstan 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-rstantools
Requires:         R-CRAN-bayesplot 
Requires:         R-CRAN-caret 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggpubr 
Requires:         R-CRAN-lmtest 
Requires:         R-CRAN-loo 
Requires:         R-CRAN-patchwork 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rstan 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-rstantools

%description
Provides tools for fitting, assessing, and comparing logistic and
conditional logistic regression models. Includes residual diagnostics and
goodness of fit measures for model development and evaluation in matched
case control studies.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}