%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  medrxivr
%global packver   0.1.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.4
Release:          1%{?dist}%{?buildtag}
Summary:          Access and Search MedRxiv and BioRxiv Preprint Data

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-curl 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-httr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-bib2df 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-progress 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-data.table 
Requires:         R-methods 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-curl 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-httr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-bib2df 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-progress 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-data.table 

%description
An increasingly important source of health-related bibliographic content
are preprints - preliminary versions of research articles that have yet to
undergo peer review. The two preprint repositories most relevant to
health-related sciences are medRxiv <https://www.medrxiv.org/> and
bioRxiv, both of which are operated by the Cold Spring Harbor Laboratory.
'medrxivr' provides programmatic access to the 'Cold Spring Harbour
Laboratory (CSHL)' API <https://api.biorxiv.org/>, allowing users to
easily download medRxiv and bioRxiv preprint metadata (e.g. title,
abstract, publication date, author list, etc) into R. 'medrxivr' also
provides functions to search the downloaded preprint records using regular
expressions and Boolean logic, as well as helper functions that allow
users to export their search results to a .BIB file for easy import to a
reference manager and to download the full-text PDFs of preprints matching
their search criteria.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}