pooldata-class {poolfstat}R Documentation

An S4 class to represent a Pool-Seq data set.

Description

An S4 class to represent a Pool-Seq data set.

Slots

npools

The number of pools

nsnp

The number of SNPs

refallele.readcount

A matrix (nsnp rows and npools columns) with read count data for the reference allele

readcoverage

A matrix (nsnp rows and Npools columns) with overall read coverage

snp.info

A matrix (nsnp rows and 4 columns) detailing for each SNP, the chromosome (or scaffold), the position, allele 1 and allele 2

poolsizes

A vector of length npools with the corresponding haploid pool sizes

poolnames

A vector of length npools with the corresponding haploid pool names

See Also

To generate pooldata object, see vcf2pooldata, popsync2pooldata, genobaypass2pooldata and genoselestim2pooldata


[Package poolfstat version 1.1.1 Index]