Computing F-Statistics from Pool-Seq Data


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Documentation for package ‘poolfstat’ version 1.1.1

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poolfstat-package PoolFstat
computeFST Compute FST from Pool-Seq data
computePairwiseFSTmatrix Compute pairwise population population FST matrix (and possibly all pairwise SNP-specific FST)
genobaypass2pooldata Convert BayPass read count and haploid pool size input files into a pooldata object
genoselestim2pooldata Convert SelEstim read count input files into a pooldata object
is.pooldata Check pooldata objects
make.example.files Create example files
pooldata An S4 class to represent a Pool-Seq data set.
pooldata-class An S4 class to represent a Pool-Seq data set.
pooldata.subset Create a subset of the pooldata object that contains Pool-Seq data
pooldata2genobaypass Convert a pooldata object into BayPass input files.
pooldata2genoselestim Convert a pooldata object into SelEstim input files.
poolfstat PoolFstat
popsync2pooldata Convert Popoolation Sync files into a pooldata object
vcf2pooldata Convert a VCF file into a pooldata object.