chillR-package |
Statistical methods for phenology analysis in temperate fruit trees |
bloom_prediction |
Bloom prediction from chilling and forcing requirements, assumed to be fulfilled strictly in sequence |
bloom_prediction2 |
Bloom prediction from chilling and forcing requirements, assumed to be fulfilled strictly in sequence - version 2 |
bloom_prediction3 |
Bloom prediction from chilling and forcing requirements, assumed to be fulfilled strictly in sequence - version 3 |
california_stations |
Weather stations in California |
check_temperature_record |
Check a daily or hourly temperature record for compliance with chillR's standards |
check_temperature_scenario |
Check temperature scenario for consistency |
chile_agromet2chillR |
Convert a weather file downloaded from the Chilean Agromet website to chillR format |
chilling |
Calculation of chilling and heat from hourly temperature records |
Chilling_Hours |
Calculation of cumulative chill according to the Chilling Hours Model |
chilling_hourtable |
Add chilling and heat accumulation to table of hourly temperatures |
chillR |
Statistical methods for phenology analysis in temperate fruit trees |
color_bar_maker |
Make color scheme for bar plots in outputs of the chillR package |
daily_chill |
Calculation of daily chill and heat accumulation |
Date2YEARMODA |
Date to YEARMODA conversion |
daylength |
Compute sunrise and sunset times, and daylength |
Dynamic_Model |
Calculation of cumulative chill according to the Dynamic Model |
Empirical_daily_temperature_curve |
Empirical daily temperature curve |
Empirical_hourly_temperatures |
Empirical daily temperature prediction |
extract_differences_between_characters |
Identify shared leading or trailing character strings |
extract_temperatures_from_grids |
Extract temperature information from gridded dataset |
filter_temperatures |
Quality filter for temperature records |
fix_weather |
Weather data fixer and quality checker |
GDD |
Calculation of cumulative heat according to the Growing Degree Day Model |
GDH |
Calculation of cumulative heat according to the Growing Degree Hours Model |
GDH_model |
Calculation of cumulative heat according to the Growing Degree Hours Model (alternative function name) |
getClimateWizardData |
Extract climate data from the ClimateWizard database |
getClimateWizard_scenarios |
Extract mutltiple scenarios from the ClimateWizard database |
get_last_date |
Get the last date from a phenology record |
get_weather |
Download weather data from online database |
handle_chile_agromet |
List, download or convert to chillR format data from the Chilean Agromet database |
handle_cimis |
List, download or convert to chillR format data from the CIMIS database |
handle_gsod |
List, download or convert to chillR format data from the Global Summary of the Day database |
handle_ucipm |
List, download or convert to chillR format data from the UCIPM database |
handle_wunderground |
List, download or convert to chillR format data from the Weather Underground airport database |
identify_common_string |
Identify shared leading or trailing character strings |
interpolate_gaps |
Linear gap interpolation |
interpolate_gaps_hourly |
Interpolate gaps in hourly temperature records |
JDay_count |
Count days between two Julian dates |
JDay_earlier |
Check whether a Julian date is before or after another one |
JDay_later |
Check whether a Julian date is after another one |
KA_bloom |
Cherry bloom data for Klein-Altendorf, Germany |
KA_weather |
Weather data for Klein-Altendorf, Germany |
leap_year |
Leap year finder |
load_ClimateWizard_scenarios |
Load climate wizard scenarios |
load_temperature_scenarios |
Load temperature scenarios |
make_all_day_table |
Fill in missing days in incomplete time series |
make_california_UCIPM_station_list |
Makes a list of the UC IPM weather stations |
make_chill_plot |
Plot climate metrics over time |
make_climate_scenario |
Make climate scenario |
make_climate_scenario_from_files |
Make climate scenario from multiple saved csv files |
make_daily_chill_figures |
Produce image of daily chill and heat accumulation |
make_daily_chill_plot |
Plot daily climate metric accumulation throughout the year |
make_daily_chill_plot2 |
Plot daily climate metric accumulation throughout the year (2) |
make_hourly_temps |
Make hourly temperature record from daily data |
make_JDay |
Make Julian Day in dataframe |
make_multi_pheno_trend_plot |
Combine multiple phenology contour plots in one figure |
make_pheno_trend_plot |
Make image showing phenology response to temperatures during two phases |
ordered_climate_list |
Sort files in a folder, so that numbers are in ascending sequence |
patch_daily_temperatures |
Patch gaps in daily weather records |
plot_climateWizard_scenarios |
Plot mutltiple ClimateWizard scenarios obtained with getClimateWizard_scenarios |
plot_climate_scenarios |
Plot multiple chilling scenario groups (or for other metrics) |
plot_PLS |
Output of Partial Least Squares analysis results of phenology vs. daily mean temperatures |
PLS_chill_force |
Partial Least Squares analysis of phenology vs. accumulated daily chill and heat |
PLS_pheno |
Partial Least Squares analysis of phenology vs. daily mean temperatures |
read_tab |
Read csv table regardless of whether it is a true csv or the French type |
RMSEP |
Root Mean Square Error of Prediction (RMSEP) |
RPD |
Residual Prediction Deviation (RPD) |
RPIQ |
Ratio of Performance to InterQuartile distance (RPIQ) |
runn_mean |
Running mean of a vector |
runn_mean_pred |
Prediction based on a running mean |
save_temperature_scenarios |
Save temperature scenarios generated with temperature_generation |
select_by_file_extension |
Select string that end in a particular way (e.g. a certain file extension) |
stack_hourly_temps |
Stacking of hourly temperatures |
stage_transitions |
Compute what it takes to advance through development stages |
step_model |
Calculation of cumulative temperature metric according to a user-defined stepwise weight function |
temperature_generation |
Generation of synthetic temperature records |
temperature_scenario_baseline_adjustment |
Make temperature scenario relative to a particular baseline |
temperature_scenario_from_records |
Make monthly temperature scenario from historic records |
tempResponse |
Calculation of climatic metrics from hourly temperature records |
tempResponse_daily_list |
Calculation of climatic metrics from lists of daily temperature records |
tempResponse_hourtable |
Add metric accumulation to table of hourly temperatures |
test_if_equal |
Test if all character vectors in a string are equal |
Utah_Model |
Calculation of cumulative chill according to the Utah Model |
VIP |
Calculate VIP scores for PLS regression |
weather2chillR |
Convert downloaded weather to chillR format |
Winters_hours_gaps |
Hourly temperature data sample |
YEARMODA2Date |
YEARMODA to Date conversion |