add.dates {rplum} | R Documentation |
Add dated depths to plots, e.g. to show dates that weren't used in the age-depth model
add.dates( mn, sdev, depth, cc = 1, above = 1e-06, ex = 10, normal = TRUE, normalise = TRUE, t.a = 3, t.b = 4, age.res = 100, times = 20, col = rgb(1, 0, 0, 0.5), border = rgb(1, 0, 0, 0.5), rotate.axes = FALSE, mirror = TRUE, up = TRUE, BCAD = FALSE, pch = 4 )
mn |
Reported mean of the date. Can be multiple dates. |
sdev |
Reported error of the date. Can be multiple dates. |
depth |
Depth of the date. |
cc |
The calibration curve to use: |
above |
Treshold for plotting of probability values. Defaults to |
ex |
Exaggeration of probability distribution plots. Defaults to |
normal |
By default, Bacon uses the student's t-distribution to treat the dates. Use |
normalise |
By default, the date is normalised to an area of 1 ( |
t.a |
The dates are treated using the student's t distribution by default ( |
t.b |
The dates are treated using the student's t distribution by default ( |
age.res |
Resolution of the date's distribution. Defaults to |
times |
The extent of the range to be calculated for each date. Defaults to |
col |
The colour of the ranges of the date. Default is semi-transparent red: |
border |
The colours of the borders of the date. Default is semi-transparent red: |
rotate.axes |
The default of plotting age on the horizontal axis and event probability on the vertical one can be changed with |
mirror |
Plot the dates as 'blobs'. Set to |
up |
Directions of distributions if they are plotted non-mirrored. Default |
BCAD |
The calendar scale of graphs is in |
pch |
The shape of any marker to be added to the date. Defaults to a cross, |
Sometimes it is useful to add additional dating information to age-depth plots, e.g., to show outliers or how dates calibrate with different estimated offsets.
A date's distribution, added to an age-depth plot.
Maarten Blaauw, J. Andres Christen
Blaauw, M. and Christen, J.A., Flexible paleoclimate age-depth models using an autoregressive gamma process. Bayesian Anal. 6 (2011), no. 3, 457–474. https://projecteuclid.org/euclid.ba/1339616472
http://www.qub.ac.uk/chrono/blaauw/manualBacon_2.3.pdf