adductsTable |
Adducts table |
assignDB |
load LipidMS default data bases |
baconjdb |
Bile acids conjugates database |
badb |
Bile acids database |
carnitinesdb |
Carnitines database |
CEdb |
CEs database |
cerdb |
ceramides database |
chainFrags |
Search of chain specific fragments |
checkClass |
Search of class fragments to confirm the lipid class. |
checkIntensityRules |
Check intensity rules |
cldb |
Cardiolipins database |
coelutingFrags |
Coeluting fragments extraction |
coelutionScore |
calculate coelution score between two peaks |
combineChains |
Combine chain fragments that could belong to the same precursor. |
confLevels |
Confidence Annotation Levels |
createLipidDB |
Customizable lipid DBs creator |
crossTables |
Cross the original MS1 peaklist with the annotation results |
dataProcessing |
Process mzXML files: peakpicking and deisotoping |
dgdb |
DGs database |
fadb |
FAs database |
fahfadb |
FAHFAs database |
findCandidates |
Search of lipid candidates of a certain class. |
getInclusionList |
Obtain an inclusion list from the annotation results |
hfadb |
HFAs database |
idBAneg |
Bile Acids (BA) annotation for ESI- |
idCarpos |
Carnitine annotation for ESI+ |
idCEpos |
Cholesterol Esthers (CE) annotation for ESI+ |
idCerneg |
Ceramides (Cer) annotation for ESI- |
idCerpos |
Ceramides (Cer) annotation for ESI+ |
idCLneg |
Cardiolipines (CL) annotation for ESI- |
idDGpos |
Diacylglycerols (DG) annotation for ESI+ |
idFAHFAneg |
FAHFA annotation for ESI- |
idFAneg |
Fatty Acids (FA) annotation for ESI- |
idLPCneg |
Lysophosphocholines (LPC) annotation for ESI- |
idLPCpos |
Lysophosphocholines (LPC) annotation for ESI+ |
idLPEneg |
Lysophosphoethanolamines (LPE) annotation for ESI- |
idLPEpos |
Lysophosphoethanolamines (LPE) annotation for ESI+ |
idLPGneg |
Lysophosphoglycerols (LPG) annotation for ESI- |
idLPIneg |
Lysophosphoinositols (LPI) annotation for ESI- |
idLPSneg |
Lysophosphoserines (LPS) annotation for ESI- |
idMGpos |
Monoacylglycerol (MG) annotation for ESI+ |
idNEG |
Lipids annotation for ESI- |
idPCneg |
Phosphocholines (PC) annotation for ESI- |
idPCpos |
Phosphocholines (PC) annotation for ESI+ |
idPEneg |
Phosphoethanolamines (PE) annotation for ESI- |
idPEpos |
Phosphoethanolamines (PE) annotation for ESI+ |
idPGneg |
Phosphoglycerols (PG) annotation for ESI- |
idPIneg |
Phosphoinositols (PI) annotation for ESI- |
idPOS |
Lipids annotation for ESI+ |
idPSneg |
Phosphoserines (PS) annotation for ESI- |
idSMpos |
Sphyngomyelines (SM) annotation for ESI+ |
idSphneg |
Sphingoid bases (Sph) annotation for ESI- |
idSphPneg |
Sphingoid bases phosphate (SphP) annotation for ESI- |
idSphpos |
Sphingoid bases (Sph) annotation for ESI- |
idSphPpos |
Sphingoid bases phosphate (SphP) annotation for ESI+ |
idTGpos |
Triacylglycerols (TG) annotation for ESI+ |
lysopadb |
LPAs database |
lysopcdb |
LPCs database |
lysopedb |
LPEs database |
lysopgdb |
LPGs database |
lysopidb |
LPIs database |
lysopsdb |
LPSs database |
mgdb |
MGs database |
nlsphdb |
Neutral losses db for sphingoid bases. It is employed by idCerneg function. |
organizeResults |
Prepare output for LipidMS annotation functions |
padb |
PAs database |
pcdb |
PCs database |
pedb |
PEs database |
pgdb |
PGs database |
pidb |
PIs database |
psdb |
PSs database |
searchIsotopes |
Target isotopes search |
sepByCE |
Separate .mzXML files by CE |
smdb |
SMs database |
sphdb |
Sphingoid bases database |
sphPdb |
Sphingoid bases phosphate database |
tgdb |
TGs database |