Hardy-Weinberg Equilibrium in Polyploids


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Documentation for package ‘hwep’ version 0.0.2

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hwep-package Hardy-Weinberg Equilibrium in Polyploids
dgamete Gamete dosage probability
drbounds Upper bounds on rates of double reduction
f1dr Estimate Double Reduction in F1 Populations
freqnext Update genotype frequencies after one generation
gsegmat Segregation probabilities of gametes
gsegmat_symb Symbolic representation of the segregation probability matrix
hweboot Bootstrap procedure to test for equilibrium
hwefit Equilibrium and random mating estimation and testing for many loci.
hwefreq Generate HWE genotype frequencies
hwelike Maximum likelihood approach for equilibrium testing and double reduction estimation.
hwenodr Test for HWE in autopolyploids under the assumption of no double reduction
hwep Hardy-Weinberg Equilibrium in Polyploids
hweustat U-process minimizer approach to equilibrium testing and double reduction estimation
p_from_alpha Obtain gamete frequencies at equilibrium given rates of double reduction.
qqpvalue QQ-plot for p-values
rmlike Likelihood inference for random mating
ts_bands Get simultaneous confidence bands for a uniform QQ-plot
zsegarray Zygote segregation distributions.
zygdist Zygote dosage probabilities.