%global __brp_check_rpaths %{nil}
%global packname  survHE
%global packver   1.1.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.2
Release:          1%{?dist}%{?buildtag}
Summary:          Survival Analysis in Health Economic Evaluation

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildRequires:    R-CRAN-rstan >= 2.18.1
BuildRequires:    R-CRAN-StanHeaders >= 2.18.0
BuildRequires:    R-CRAN-BH >= 1.66.0.1
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.4.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.19
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-flexsurv 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-rms 
BuildRequires:    R-CRAN-xlsx 
BuildRequires:    R-tools 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-rstantools
Requires:         R-CRAN-rstan >= 2.18.1
Requires:         R-CRAN-Rcpp >= 0.12.19
Requires:         R-methods 
Requires:         R-CRAN-flexsurv 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-rms 
Requires:         R-CRAN-xlsx 
Requires:         R-tools 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-rstantools

%description
Contains a suite of functions for survival analysis in health economics.
These can be used to run survival models under a frequentist (based on
maximum likelihood) or a Bayesian approach (both based on Integrated
Nested Laplace Approximation or Hamiltonian Monte Carlo). The user can
specify a set of parametric models using a common notation and select the
preferred mode of inference. The results can also be post-processed to
produce probabilistic sensitivity analysis and can be used to export the
output to an Excel file (e.g. for a Markov model, as often done by
modellers and practitioners). <doi:10.18637/jss.v095.i14>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}