Findno4sUPairs {grandR} | R Documentation |
Identify all no4sU samples in the same condition, and return everything as a list to be used in PlotToxicityTest, PlotToxicityTestRank, PlotToxicityTestAll, PlotToxicityTestRankAll
Findno4sUPairs(data, paired.replicates = FALSE, discard.no4sU = TRUE)
data |
a grandR object |
paired.replicates |
pair replicates, i.e. only no4sU.A is found for 4sU.A |
discard.no4sU |
do not report references for no4sU samples |
a named list containing, for each 4sU sample, a vector of equivalent no4sU samples
PlotToxicityTest, PlotToxicityTestRank, PlotToxicityTestAll, PlotToxicityTestRankAll
sars <- ReadGRAND(system.file("extdata", "sars.tsv.gz", package = "grandR"),
design=c("Condition",Design$dur.4sU,Design$Replicate))
Findno4sUPairs(sars)