%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  simcross
%global packver   0.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.6
Release:          1%{?dist}%{?buildtag}
Summary:          Simulate Experimental Crosses

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1.0
Requires:         R-core >= 3.1.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.17
BuildRequires:    R-graphics 
BuildRequires:    R-stats 
Requires:         R-CRAN-Rcpp >= 0.12.17
Requires:         R-graphics 
Requires:         R-stats 

%description
Simulate and plot general experimental crosses. The focus is on simulating
genotypes with an aim towards flexibility rather than speed. Meiosis is
simulated following the Stahl model, in which chiasma locations are the
superposition of two processes: a proportion p coming from a process
exhibiting no interference, and the remainder coming from a process
following the chi-square model.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}