%global __brp_check_rpaths %{nil}
%global packname  corrcoverage
%global packver   1.2.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.1
Release:          3%{?dist}%{?buildtag}
Summary:          Correcting the Coverage of Credible Sets from Bayesian GeneticFine Mapping

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-magrittr 
Requires:         R-stats 
Requires:         R-CRAN-matrixStats 
Requires:         R-CRAN-Rcpp 

%description
Using a computationally efficient method, the package can be used to find
the corrected coverage estimate of a credible set of putative causal
variants from Bayesian genetic fine-mapping. The package can also be used
to obtain a corrected credible set if required; that is, the smallest set
of variants required such that the corrected coverage estimate of the
resultant credible set is within some user defined accuracy of the desired
coverage. Maller et al. (2012) <doi:10.1038/ng.2435>, Wakefield (2009)
<doi:10.1002/gepi.20359>, Fortune and Wallace (2018)
<doi:10.1093/bioinformatics/bty898>.

%prep
%setup -q -c -n %{packname}


%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}

test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%files
%{rlibdir}/%{packname}