%global __brp_check_rpaths %{nil}
%global packname  SEset
%global packver   1.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Computing Statistically-Equivalent Path Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-combinat 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-Rdpack 
BuildRequires:    R-stats 
Requires:         R-CRAN-combinat 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-Rdpack 
Requires:         R-stats 

%description
Tools to compute and analyze the set of statistically-equivalent
(Gaussian, linear) path models which generate the input precision or
(partial) correlation matrix. This procedure is useful for understanding
how statistical network models such as the Gaussian Graphical Model (GGM)
perform as causal discovery tools. The statistical-equivalence set of a
given GGM expresses the uncertainty we have about the sign, size and
direction of directed relationships based on the weights matrix of the GGM
alone. The derivation of the equivalence set and its use for understanding
GGMs as causal discovery tools is described by Ryan, O., Bringmann, L.F.,
& Schuurman, N.K. (2022) <doi: 10.31234/osf.io/ryg69>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}