%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  provSummarizeR
%global packver   1.5.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.5.1
Release:          1%{?dist}%{?buildtag}
Summary:          Summarizes Provenance Related to Inputs and Outputs of a Script or Console Commands

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-provParseR >= 1.0
Requires:         R-CRAN-provParseR >= 1.0

%description
Reads the provenance collected by the 'rdtLite' or 'rdt' packages, or
other tools providing compatible PROV JSON output, created by the
execution of a script or a console session, and provides a human-readable
summary identifying the input and output files, the scripts used (if any),
errors and warnings produced, and the environment in which it was
executed. It can also optionally package all the files into a zip file.
The exact format of the PROV JSON file created by 'rdtLite' and 'rdt' is
described in <https://github.com/End-to-end-provenance/ExtendedProvJson>.
More information about 'rdtLite' and associated tools is available at
<https://github.com/End-to-end-provenance/> and Lerner, Boose, and Perez
(2018), Using Introspection to Collect Provenance in R, Informatics, <doi:
10.3390/informatics5010012>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}