%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  hSDM
%global packver   1.4.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.4.4
Release:          1%{?dist}%{?buildtag}
Summary:          Hierarchical Bayesian Species Distribution Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    gsl-devel
BuildRequires:    R-devel
Requires:         R-core
BuildRequires:    R-CRAN-coda 
Requires:         R-CRAN-coda 

%description
User-friendly and fast set of functions for estimating parameters of
hierarchical Bayesian species distribution models (Latimer and others 2006
<doi:10.1890/04-0609>). Such models allow interpreting the observations
(occurrence and abundance of a species) as a result of several
hierarchical processes including ecological processes (habitat
suitability, spatial dependence and anthropogenic disturbance) and
observation processes (species detectability). Hierarchical species
distribution models are essential for accurately characterizing the
environmental response of species, predicting their probability of
occurrence, and assessing uncertainty in the model results.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}