%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MarZIC
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Marginal Mediation Effects with Zero-Inflated Compositional Mediator

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildRequires:    R-CRAN-Rcpp >= 1.0.9
BuildRequires:    R-CRAN-NlcOptim 
BuildRequires:    R-CRAN-betareg 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-pracma 
BuildRequires:    R-CRAN-mathjaxr 
BuildRequires:    R-CRAN-dirmult 
BuildRequires:    R-stats 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-Rcpp >= 1.0.9
Requires:         R-CRAN-NlcOptim 
Requires:         R-CRAN-betareg 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-pracma 
Requires:         R-CRAN-mathjaxr 
Requires:         R-CRAN-dirmult 
Requires:         R-stats 
Requires:         R-parallel 

%description
A way to estimate and test marginal mediation effects for zero-inflated
compositional mediators. Estimates of Natural Indirect Effect (NIE),
Natural Direct Effect (NDE) of each taxon, as well as their standard
errors and confident intervals, were provided as outputs. Zeros will not
be imputed during analysis. See Wu et al. (2022)
<doi:10.3390/genes13061049>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}