%global __brp_check_rpaths %{nil}
%global packname  gpmap
%global packver   0.1.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.2
Release:          1%{?dist}%{?buildtag}
Summary:          Analysing and Plotting Genotype-Phenotype Maps

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-isotone 
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-foreach 
Requires:         R-CRAN-isotone 
Requires:         R-CRAN-plyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-foreach 

%description
Tools for studying genotype-phenotype maps for bi-allelic loci underlying
quantitative phenotypes. The 0.1 version is released in connection with
the publication of Gjuvsland et al (2013) and implements basic line plots
and the monotonicity measures for GP maps presented in the paper.
Reference: Gjuvsland AB, Wang Y, Plahte E and Omholt SW (2013)
Monotonicity is a key feature of genotype-phenotype maps. Frontier in
Genetics 4:216 <doi:10.3389/fgene.2013.00216>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}